DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-beta and lrit3a

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001122166.1 Gene:lrit3a / 558559 ZFINID:ZDB-GENE-080723-63 Length:636 Species:Danio rerio


Alignment Length:589 Identity:119/589 - (20%)
Similarity:195/589 - (33%) Gaps:190/589 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 WQLLLLLLLGNCIDLTVSNKISSVGAFEPDFVIPLENVTIAQGRDATFTCVVNNL----GGHRVS 130
            |:.|..:.....:||. :|:::||......::|.:..:.|:..:..|....:.::    .|.:.|
Zfish   122 WESLKEMPSLKTLDLH-NNRLTSVPVEAAPYLINITYLDISSNKLTTLPSDLVDIWPPFSGIQPS 185

  Fly   131 GDGSSAPAKVAWIKADAKAILAIHEHVITNNDRLSVQHNDYNTWTLNIRGVKMEDAGK------- 188
            .:.|.            |.:|.:.:                |.|..:.|..|:.:..|       
Zfish   186 ANTSQ------------KTVLGLQD----------------NPWYCDCRISKLIELSKMAGIPVV 222

  Fly   189 YMCQVNT-------DPMKMQTATLEVVIPPDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITW 246
            .|.||.|       ..:..|.|.|:..:.|.::...|.  :..|.|.:..|.|.|.|.|.|.:.|
Zfish   223 LMDQVLTCSGPEHLSGVLFQRAELDQCVKPTVMTSATK--ITSPLGSNVLLRCDANGFPTPTLLW 285

  Fly   247 RREDGREIIARNGSHQKTKAQSVEGEMLTLSKITRSEMGAYMCIASN--------------GVPP 297
            ...||.  :..|...|::..:.|...:|:|..|...:.|.|.|.|.|              ||.|
Zfish   286 TTADGS--VVNNTVVQESPGEGVRWSILSLHSIVFKDAGDYRCKAKNVAGNAEAYITLSVDGVQP 348

  Fly   298 T-------VSK-------------RMKLQVHFHPLVQVPNQLVGAPVLTDVTLIC---------N 333
            |       ::|             :|.|.....|:.     :...||:|.:..:.         .
Zfish   349 TTPFPPINITKQPEDQPTTTFTPTKMPLFTSLSPIT-----ITTRPVMTTMPPLTTRKSPIPGGG 408

  Fly   334 VEASPKAINYWQRENGEMIIAGDRYALTEKENNMYAIEMILHIKRLQSSDFGGYKCISKNSIGD- 397
            |:.||.              |||:.|..::..|                   |...|.|:.|.| 
Zfish   409 VQRSPP--------------AGDKPAKVQQSKN-------------------GKGSIKKSDIRDI 440

  Fly   398 ------TEGTIRLYEMERPGKKILRDDDLNEV-----SKNEVVQKDTRSEDGSRNLNGRLYKDRA 451
                  ||..:.|:..|    .:..|..|..|     :|::....||  |.|...|   |.:...
Zfish   441 EVVEETTETAVLLWSAE----GLPSDTPLTVVYFPYDAKDDKETVDT--EVGQGKL---LLEYLM 496

  Fly   452 PDQ-------HPASGSDQLLGRGTMRLIG------TFLLALLVLFTALAEAGPTTL--------- 494
            |:|       ..:||.:|.:...|:.:.|      ..::|..:   |.|.|.|..:         
Zfish   497 PNQVYTVCLVTKSSGKEQCVDFSTLEIGGEEGQNKVLMIASAI---ACAIAVPLIVVLLYKILCL 558

  Fly   495 -----SCRTKGGRQKKAK------ETSWNGRRARDGR-EDGHAAEWRQCWERSALSWRRSAPPEL 547
                 |.|..|..:..:|      ||....:|..:|: .|..|....|..||..|..|.|...::
Zfish   559 YCKGNSSRNNGPDEDLSKDTYVKFETLTMKQRTLNGQANDLWARRQTQESERMLLCSRSSIDSQM 623

  Fly   548 DYYS 551
            .|.|
Zfish   624 TYKS 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 20/128 (16%)
ig 102..195 CDD:278476 16/103 (16%)
IG_like 219..307 CDD:214653 29/121 (24%)
Ig 221..307 CDD:299845 29/119 (24%)
Ig 311..404 CDD:299845 19/108 (18%)
IG_like 327..405 CDD:214653 15/93 (16%)
lrit3aNP_001122166.1 LRR_8 81..141 CDD:290566 5/19 (26%)
leucine-rich repeat 83..106 CDD:275378
LRR_4 107..145 CDD:289563 6/23 (26%)
leucine-rich repeat 107..130 CDD:275378 2/7 (29%)
LRR_8 129..>171 CDD:290566 8/42 (19%)
LRR_4 129..170 CDD:289563 8/41 (20%)
leucine-rich repeat 131..154 CDD:275378 5/23 (22%)
leucine-rich repeat 155..168 CDD:275378 1/12 (8%)
TPKR_C2 199..249 CDD:301599 12/49 (24%)
Ig 252..343 CDD:299845 24/94 (26%)
IG_like 261..343 CDD:214653 22/83 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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