DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-beta and lrit1a

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001018174.2 Gene:lrit1a / 553943 ZFINID:ZDB-GENE-040924-5 Length:643 Species:Danio rerio


Alignment Length:299 Identity:60/299 - (20%)
Similarity:112/299 - (37%) Gaps:97/299 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 WQLLLLLLLGNCIDLTVSNKISSVGAFEPDFVIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGS 134
            |:.|:.:.....:|:. :|::||:.:   :..:.::|:|.       .....|||         .
Zfish   124 WESLMDMPSLRLLDIH-NNQLSSLPS---EAALYMKNITY-------LDLSSNNL---------L 168

  Fly   135 SAPAKV--AWI-------KADAKAILAIHEH------------VITNNDRLSVQHNDYNTWTL-- 176
            :.||:|  .|:       ...:|.||.:|::            ....:..|||...|......  
Zfish   169 TVPAEVLNTWLTIKPTLGAESSKLILGLHDNPWLCDCRLYDLVQFQKSPSLSVAFIDTRLRCADP 233

  Fly   177 -NIRGVKMEDAGKYMCQ---VNTDPMKMQTATLEVVIPPDIINEETSGDMMVPEGGSAKLVCRAR 237
             ::.||...||....||   |:|...::::|.                      |.:..|.|...
Zfish   234 ESLSGVLFSDAELRRCQGPRVHTAVARVRSAV----------------------GNNVLLRCGTV 276

  Fly   238 GHPKPKITWRREDGREIIARNGS-HQKTKAQSVEGEMLTLSKITRSEMGAYMCIAS--------- 292
            |.|.|::.|||.||:.:   ||: ..:...:.:...:|::..::..:.|.|:|.|:         
Zfish   277 GVPIPELAWRRADGKPL---NGTVLLENSKEGIVWSILSVPAVSYRDTGKYICKATNYAGSAEAV 338

  Fly   293 -----NGVP----PTVSKRMKLQVHFHPLVQVPNQLVGA 322
                 |..|    ||:..:.||:      .:.||.:|.|
Zfish   339 ISLIINDAPKMENPTLDPKPKLK------SKKPNTMVKA 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 26/137 (19%)
ig 102..195 CDD:278476 24/119 (20%)
IG_like 219..307 CDD:214653 24/106 (23%)
Ig 221..307 CDD:299845 24/104 (23%)
Ig 311..404 CDD:299845 4/12 (33%)
IG_like 327..405 CDD:214653
lrit1aNP_001018174.2 leucine-rich repeat 61..84 CDD:275378
LRR_8 63..119 CDD:290566
LRR_RI <77..175 CDD:238064 13/70 (19%)
leucine-rich repeat 85..108 CDD:275378
LRR_8 108..167 CDD:290566 9/53 (17%)
leucine-rich repeat 109..132 CDD:275378 2/7 (29%)
leucine-rich repeat 133..156 CDD:275378 4/26 (15%)
leucine-rich repeat 157..170 CDD:275378 4/28 (14%)
LRRCT 199..243 CDD:214507 6/43 (14%)
I-set 252..343 CDD:254352 21/115 (18%)
Ig 259..333 CDD:299845 19/98 (19%)
fn3 448..515 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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