DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-beta and robo2

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster


Alignment Length:502 Identity:110/502 - (21%)
Similarity:185/502 - (36%) Gaps:122/502 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 LLLLLLGNCIDLTVSNKISSVGAFE---PDFVIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGS 134
            |||||.|       .|.::.|||.:   |..:....:.|:.:....||.|          ..:|:
  Fly    70 LLLLLAG-------LNGLTQVGALKGENPRIIEHPMDTTVPKNDPFTFNC----------QAEGN 117

  Fly   135 SAPAKVAWIK--ADAKAILAIHEHVITNNDR--LSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNT 195
            ..|. :.|.|  .:.|.....|..::.....  |.|.|:.           :..|||.|.|:...
  Fly   118 PTPT-IQWFKDGRELKTDTGSHRIMLPAGGLFFLKVIHSR-----------RESDAGTYWCEAKN 170

  Fly   196 D--PMKMQTATLEVVIPPDIINEETSGDMMVPEGGSAKLVCRA-RGHPKPKITWRREDGREIIAR 257
            :  ..:.:.|||:|....|....|.: :..|.:|..|.:.|.| ||.|:|:|:||:......:..
  Fly   171 EFGVARSRNATLQVAFLRDEFRLEPA-NTRVAQGEVALMECGAPRGSPEPQISWRKNGQTLNLVG 234

  Fly   258 NGSHQKTKAQSVEGEMLTLSKITRSEMGAYMCIASNGVPPTVSKRMKLQVHFHP-LVQVP-NQLV 320
            |     .:.:.|:|..|.:.:..:|:.|.|.|:..|.|....|....|:||..| |::.| ||. 
  Fly   235 N-----KRIRIVDGGNLAIQEARQSDDGRYQCVVKNVVGTRESATAFLKVHVRPFLIRGPQNQT- 293

  Fly   321 GAPVLTDVTLICNVEASPKAINYWQR--ENGEMIIAGDRYALTEKENNMYAIE-MILHIKRLQSS 382
             |.|.:.|...|.:...|.....|:|  ..|.|.:           ..::.:| ..|.:..:...
  Fly   294 -AVVGSSVVFQCRIGGDPLPDVLWRRTASGGNMPL-----------RRVHVLEDRSLKLDDVTLE 346

  Fly   383 DFGGYKCISKNSIGDTEGTIRLYEMERPGKKILRDDDLNEVSKNEVVQKDTR------------- 434
            |.|.|.|.:.|::|....| .:..:..|.|.::|       .||::|:....             
  Fly   347 DMGEYTCEADNAVGGITAT-GILTVHAPPKFVIR-------PKNQLVEIGDEVLFECQANGHPRP 403

  Fly   435 ----SEDGSRNL------NGRLYKDRAPD--------QHPASGSDQLLGRGTMRLIGTFLLALLV 481
                |.:|:.:|      :||:.....|:        :.....|.:::....:..:|:.....:|
  Fly   404 TLYWSVEGNSSLLLPGYRDGRMEVTLTPEGRSVLSIARFAREDSGKVVTCNALNAVGSVSSRTVV 468

  Fly   482 -------LFTALAEAGP----------TTLSCRTKGGRQKKAKETSW 511
                   |...:.|.||          ..|.|||.|   ....:.||
  Fly   469 SVDTQFELPPPIIEQGPVNQTLPVKSIVVLPCRTLG---TPVPQVSW 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 23/116 (20%)
ig 102..195 CDD:278476 18/96 (19%)
IG_like 219..307 CDD:214653 24/88 (27%)
Ig 221..307 CDD:299845 24/86 (28%)
Ig 311..404 CDD:299845 23/97 (24%)
IG_like 327..405 CDD:214653 16/80 (20%)
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317 22/116 (19%)
I-set 91..184 CDD:254352 22/114 (19%)
I-set 190..279 CDD:254352 25/94 (27%)
Ig2_Robo 193..279 CDD:143201 25/91 (27%)
I-set 283..370 CDD:254352 23/100 (23%)
Ig 300..370 CDD:299845 16/81 (20%)
Ig 388..>457 CDD:299845 7/68 (10%)
I-set 479..561 CDD:254352 10/37 (27%)
Ig 496..561 CDD:143165 7/20 (35%)
FN3 588..681 CDD:238020
FN3 <817..856 CDD:238020
fn3 864..952 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12231
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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