DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-beta and Dscam3

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster


Alignment Length:519 Identity:118/519 - (22%)
Similarity:193/519 - (37%) Gaps:128/519 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 ERIADISCSQEHTTKFSPKLSQVAKHRKLAQLEIASGSGLVGLGTGTGTGSGCGPAIRWQLLLLL 76
            |:|......||.||         :.|.:||  .:|.|..||......|...|             
  Fly   568 EQIRWEKAHQELTT---------SNHYELA--SVADGGQLVIKNVEPGRDQG------------- 608

  Fly    77 LLGNCI-----------DLTVSNKISSVGAFEPDFVIPLENVTIAQGRDATFTCVVNNLGGHRVS 130
             :..||           |:.::  ::|....|| |..|   ..:.:|..|..||.|:       |
  Fly   609 -IYTCIVRSRAGEEARRDMQLN--VNSPPVIEP-FKFP---KNLQEGGRAQITCAVS-------S 659

  Fly   131 GDGSSAPAKVAWIKADAKAILAIHEHVITNNDRLSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNT 195
            ||   .|...:|.|.|:.         |.::.:::.:..::.: .|..:.:....:|||.|..:.
  Fly   660 GD---MPIYFSWKKDDSS---------IPSSLQITEKKEEFYS-LLVFKDISARHSGKYTCYASN 711

  Fly   196 DPMKMQ-TATLEVVIPPDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGREIIARNG 259
            ...|:. ||.|:|.:.|....|.....:|:  |.:..:.|.|.|:|.|.|||.:..|:      |
  Fly   712 AAAKVNYTAELQVRVAPRWRYEPMDTAIML--GNTISINCEAEGYPIPTITWFKGQGK------G 768

  Fly   260 SHQKTKAQSVEGEMLTLSKITRSEMGAYMCIASNGVPPTVSKRMKLQVHFHPLVQVPNQLVGAPV 324
            | :..|..|:....|.|:..|.::.|.|||.|:|.:...:.|.:::.|:.....:...:.:.:..
  Fly   769 S-KDFKPLSMRNHSLLLNLATDNDEGYYMCQATNEIGAGLKKTIRINVNEPARFEQSARNISSRR 832

  Fly   325 LTDVTLICNVEASPKAINYWQRENGEMIIAGDRYALTEKENNMYAIEMILHIKRLQSSDFGGYKC 389
            ...|||.|:.:........|.:.||.:.:...|:::.|.:... .::..|.|......|.|.|:|
  Fly   833 NDPVTLDCHAKGDEPITIGWTQNNGRIDLNNFRFSIAEMKTEK-GVDSQLTIGHSDRHDSGVYRC 896

  Fly   390 ISKNSIGDTEGTIRLYEMERPGKKILRDDDLNEVSKNEVVQKDTRS-----EDGSRNLNGRLYKD 449
            |::|..|..|..|.|...|||                     ||.|     |.|||.:       
  Fly   897 IAENPYGRAEQIIFLAVQERP---------------------DTPSHLEIFEVGSRTV------- 933

  Fly   450 RAPDQHPASGSDQLLGRGTMRLIGTFLLALLVLFTALAEAGPTTLSCRTKGGRQKKAKETSWNG 513
            :...:.|..|:..:|.    .|:....|..|....:||.||                  ..|||
  Fly   934 KLSWRRPFDGNSPVLS----YLVQYQALKYLQSHGSLAAAG------------------GDWNG 975

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 26/111 (23%)
ig 102..195 CDD:278476 19/92 (21%)
IG_like 219..307 CDD:214653 25/87 (29%)
Ig 221..307 CDD:299845 25/85 (29%)
Ig 311..404 CDD:299845 20/92 (22%)
IG_like 327..405 CDD:214653 20/77 (26%)
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165
IGc2 553..619 CDD:197706 17/75 (23%)
I-set 634..724 CDD:254352 26/113 (23%)
ig 645..712 CDD:278476 18/86 (21%)
IG_like 734..815 CDD:214653 25/89 (28%)
Ig 745..815 CDD:299845 23/76 (30%)
I-set 820..913 CDD:254352 21/93 (23%)
Ig 838..920 CDD:299845 23/103 (22%)
FN3 917..1033 CDD:238020 21/109 (19%)
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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