DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-beta and dscamb

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_009289749.1 Gene:dscamb / 386937 ZFINID:ZDB-GENE-031118-67 Length:2020 Species:Danio rerio


Alignment Length:587 Identity:120/587 - (20%)
Similarity:194/587 - (33%) Gaps:212/587 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VVKESGERIADISCSQEHTTKFSPKLSQVAKHRKLAQLEIASGSGLVGLGTGTGTGSGCGPAIRW 70
            |:|:|..|:..|..::.|          |..:..::..:::.| |:.........||     :.:
Zfish   447 VIKDSNHRMDRIITTEGH----------VLSYLNVSHTQVSDG-GVYRCTCNNSAGS-----VSY 495

  Fly    71 QLLLLLLLGNCIDLTVSNKISSVGAFEPDFVIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGSS 135
            |                   :.:....|..:.|::|||...|||....|        |:.|    
Zfish   496 Q-------------------ARINVRGPASIRPMKNVTAIAGRDTYIHC--------RIIG---- 529

  Fly   136 AP-AKVAWIKADAKAILAIHEHVITNNDRLSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNTDPMK 199
            .| ..:.|.|         ..:::..|.|   |....|..||.:..|:..|.|:|.|.|..||.|
Zfish   530 YPYYSIKWYK---------DSNLLPFNHR---QRAFENNGTLKLSNVQNSDEGEYTCYVLVDPEK 582

  Fly   200 M--QTATLEVVIPPDIINEET----------------SGDM------------------------ 222
            .  ::..:.|.:||.|.:.::                |||:                        
Zfish   583 QIHRSVHVTVKVPPLIQHSDSQSASIGQRVFIPCVVISGDLPMSITWHKDGRPINASLGVTIDNI 647

  Fly   223 --------------------------------------MVPE-------------GGSAKLVCRA 236
                                                  .||.             |.|..|.|.|
Zfish   648 DFTSSLRISNLSEIHNGSYTCIARNEAAAVEHSIQLIVKVPPHFEVQPKDQDGIYGKSVTLNCSA 712

  Fly   237 RGHPKPKITWRREDGREI-----IARNGSHQKTKAQSVEGEMLTLSKITRSEMGAYMCIASNGVP 296
            :|:|.|.|.|....|..:     ||.|..   ::.|.:|...|.:..:...:.|.|:|..||.|.
Zfish   713 KGNPIPTIVWNHSKGAGVPQFQPIALNSG---SRVQLLENGSLLIKHVLEEDAGFYLCKVSNDVG 774

  Fly   297 PTVSKRMKLQVHFHPLVQVPNQLVGAPVLTD------VTLICNVEASPKAINYWQRE----NGEM 351
            ..:||.|.|      .|::|..:...|..|.      ..:.|...........|::|    |.:|
Zfish   775 ADISKSMYL------TVKIPAMITSYPNTTRAEQGHMTEMSCTAHGEKPIKVRWEKESHIINPDM 833

  Fly   352 IIAGDRYALTEKE--NNMYAIEMILHIKRLQSSDFGGYKCISKNSIGDTEGTIRLYEMERPGKKI 414
                .||.:|.||  :.:.:...|||..|   .|.|.:.||:.||.|:.:|.|:|...:||... 
Zfish   834 ----SRYVVTVKEVGDEVISTLQILHTVR---EDSGFFSCIAINSYGEDKGIIQLIVQDRPDPP- 890

  Fly   415 LRDDDLNEVSKNEVVQKDTRSEDGSRNLNG---------------RLYKDRAP--------DQHP 456
              :.::.||....:..:.|...||:..:.|               ::.||.:|        :.||
Zfish   891 --EVEIREVKDRTIALRWTMGFDGNSPITGYDINYKNKSASWASSQMTKDVSPQLNQATIIELHP 953

  Fly   457 AS 458
            ||
Zfish   954 AS 955

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 30/113 (27%)
ig 102..195 CDD:278476 25/93 (27%)
IG_like 219..307 CDD:214653 32/167 (19%)
Ig 221..307 CDD:299845 30/165 (18%)
Ig 311..404 CDD:299845 27/104 (26%)
IG_like 327..405 CDD:214653 23/89 (26%)
dscambXP_009289749.1 I-set 132..198 CDD:254352
I-set 225..310 CDD:254352
IGc2 239..300 CDD:197706
IG_like 320..400 CDD:214653
IGc2 328..391 CDD:197706
IG_like 417..501 CDD:214653 12/88 (14%)
Ig 424..498 CDD:143165 12/85 (14%)
IG_like 511..592 CDD:214653 27/104 (26%)
IGc2 518..576 CDD:197706 20/81 (25%)
I-set 595..685 CDD:254352 6/89 (7%)
Ig 612..682 CDD:143165 3/69 (4%)
I-set 689..785 CDD:254352 27/104 (26%)
Ig7_DSCAM 706..785 CDD:143211 25/87 (29%)
IG_like 795..883 CDD:214653 26/94 (28%)
Ig 803..890 CDD:299845 26/93 (28%)
FN3 887..980 CDD:238020 14/72 (19%)
FN3 987..1084 CDD:238020
FN3 1092..1185 CDD:238020
FN3 1190..1279 CDD:238020
IGc2 1302..1367 CDD:197706
FN3 1398..1471 CDD:238020
FN3 1485..1557 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.