DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-beta and ncam1a

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_009293555.1 Gene:ncam1a / 30447 ZFINID:ZDB-GENE-990415-31 Length:1010 Species:Danio rerio


Alignment Length:510 Identity:100/510 - (19%)
Similarity:182/510 - (35%) Gaps:121/510 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 IRWQLLLLLLLGNCIDLTVSNKISSVGAFEPDFVIPLENVTIAQGRDATFTCVVNNLGGHRVSGD 132
            ||..:..||.||....|.|.             :.|.:. .|:.|....|.|        .|.||
Zfish     4 IRDLIWTLLFLGYAAALQVE-------------ITPTQG-EISVGESKFFLC--------EVVGD 46

  Fly   133 GSSAPAKVAWIKADAKAILAIHEHVITNNDRLSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNTDP 197
            ..    ::.|...:.       |.::.....:|:...|.::.||.|....::.||.|.|...:..
Zfish    47 AK----EIDWFAPNG-------EKLLPGRPDISISKTDESSSTLTIYNANVDHAGMYKCVAKSGE 100

  Fly   198 MKMQTATLEVVIPPDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGREIIARNGSHQ 262
            .:.| .|:.|.|...:..:.........||..|.::|.....|.|.|.||             ::
Zfish   101 KESQ-GTIIVKIFQKLTFQYAPSPQEFNEGDDADIICDVISSPPPTIIWR-------------YK 151

  Fly   263 KTKAQS--------VEGEMLTLSKITRSEMGAYMC---IASNGVPPTVSKR-MKLQVHFHPLVQV 315
            |.:.|.        :....|.:..|.:::.|.|.|   |.:.|   .:..| :|:.|:..|.::.
Zfish   152 KMRIQPETDVRLKVLSNNHLQIRGIKKTDEGDYTCEGRIMARG---EIDLRVIKVIVNVLPSIRT 213

  Fly   316 PNQLVG--APVLTDVTLICNVEASPKAINYWQRENGEMIIAGDRYALTEKENNMYAIEMILHIKR 378
            ....:.  |.:...|||.|:.:..|:....|.|.|.| :.:.::|:|.|..:.       |.||.
Zfish   214 RYTELNATADINQAVTLACHADGYPEPTVKWARGNTE-LESDEKYSLNEDGSE-------LTIKD 270

  Fly   379 LQSSDFGGYKCISKNSIGDTEGTIRLYEMERPGKKILRDDDLNEVSKNEVVQKDTRSEDGSRNL- 442
            :...|.|.||||::|..|:....:.|....:|....|.:...:|: :.::......:.|.:.|: 
Zfish   271 VNKLDEGDYKCIARNKAGERSEEVTLNVFVQPKITFLENQTASEL-EEQITLTCEATGDPTPNII 334

  Fly   443 ---NGRLYKDR------APDQHPASGSDQLLGRGTMRLIGTFLLALLVLFTALAEAGPTTLSCRT 498
               ..|::.:.      .|::|.:...:.:: |...|     :.:|.:.:....:||....:.|.
Zfish   335 WSFGRRVFTENEQASWTRPEKHKSLDGNVVV-RSDAR-----VSSLTLKYVQFTDAGQYLCTARN 393

  Fly   499 KGGR---------------QKKAKETSWNGRRA-----------------RDGRE 521
            ..|:               |......:|.|..|                 |||::
Zfish   394 SIGQDIQSMYLEVRYAPKIQGPQAVFTWEGNPANITCEALAHPGASVLWFRDGQQ 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 22/110 (20%)
ig 102..195 CDD:278476 19/92 (21%)
IG_like 219..307 CDD:214653 20/99 (20%)
Ig 221..307 CDD:299845 20/97 (21%)
Ig 311..404 CDD:299845 25/94 (27%)
IG_like 327..405 CDD:214653 23/77 (30%)
ncam1aXP_009293555.1 Ig 20..112 CDD:299845 24/125 (19%)
I-set 21..111 CDD:254352 23/123 (19%)
IG_like 121..200 CDD:214653 18/94 (19%)
IGc2 128..189 CDD:197706 16/73 (22%)
Ig 208..301 CDD:299845 26/100 (26%)
IG_like 219..298 CDD:214653 25/86 (29%)
Ig 300..406 CDD:299845 15/112 (13%)
IG_like 308..406 CDD:214653 13/104 (13%)
ig 413..498 CDD:278476 7/36 (19%)
IG_like 415..498 CDD:214653 6/34 (18%)
fn3 505..589 CDD:278470
FN3 624..715 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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