DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-beta and Lsamp

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:317 Identity:89/317 - (28%)
Similarity:139/317 - (43%) Gaps:43/317 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 DFVIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVAWIKADAKAILAIHEHVITNNDR 163
            ||....:|:|:.||..|...|||.:..            :||||:.... .|.|.|:. .:.:.|
  Rat    50 DFNRGTDNITVRQGDTAILRCVVEDKN------------SKVAWLNRSG-IIFAGHDK-WSLDPR 100

  Fly   164 LSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNT--DPMKMQTATLEVVIPPDIINEETSGDMMVPE 226
            :.::......::|.|:.|.:.|.|.|.|.|.|  :| |.....|.|.:||.|.|  .|.|:.|.|
  Rat   101 VELEKRHALEYSLRIQKVDVYDEGSYTCSVQTQHEP-KTSQVYLIVQVPPKISN--ISSDVTVNE 162

  Fly   227 GGSAKLVCRARGHPKPKITWRREDGREIIARNGSHQKTKAQSVEG--EMLTLSKITRSEMGAYMC 289
            |.:..|||.|.|.|:|.||||             |.....:..||  |.|.:..|||.:.|.|.|
  Rat   163 GSNVTLVCMANGRPEPVITWR-------------HLTPLGREFEGEEEYLEILGITREQSGKYEC 214

  Fly   290 IASNGVPPTVSKRMKLQVHFHPLVQVPNQLVGAPVLTDVTLICNVEASPKAINYWQRENGEMIIA 354
            .|:|.|.....|::|:.|::.|.: ..::...|......:|.|...|.|.....|.|::..:..|
  Rat   215 KAANEVSSADVKQVKVTVNYPPTI-TESKSNEATTGRQASLKCEASAVPAPDFEWYRDDTRINSA 278

  Fly   355 -GDRYALTEKENNMYAIEMILHIKRLQSSDFGGYKCISKNSIGDTEGTIRLYEMERP 410
             |.....||.:::       |.:..:....:|.|.|::.|.:|.|..::.|::...|
  Rat   279 NGLEIKSTEGQSS-------LTVTNVTEEHYGNYTCVAANKLGVTNASLVLFKRVLP 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 31/111 (28%)
ig 102..195 CDD:278476 24/92 (26%)
IG_like 219..307 CDD:214653 32/89 (36%)
Ig 221..307 CDD:299845 31/87 (36%)
Ig 311..404 CDD:299845 19/93 (20%)
IG_like 327..405 CDD:214653 17/78 (22%)
LsampXP_038944182.1 Ig 55..145 CDD:416386 28/104 (27%)
FR1 55..71 CDD:409353 5/15 (33%)
Ig strand A' 56..62 CDD:409353 2/5 (40%)
Ig strand B 64..72 CDD:409353 2/7 (29%)
CDR1 72..76 CDD:409353 1/3 (33%)
FR2 77..84 CDD:409353 4/6 (67%)
Ig strand C 77..83 CDD:409353 4/5 (80%)
CDR2 85..95 CDD:409353 3/11 (27%)
Ig strand C' 87..90 CDD:409353 1/2 (50%)
Ig strand C' 92..95 CDD:409353 1/3 (33%)
FR3 96..131 CDD:409353 8/34 (24%)
Ig strand D 100..107 CDD:409353 1/6 (17%)
Ig strand E 110..116 CDD:409353 1/5 (20%)
Ig strand F 123..131 CDD:409353 3/7 (43%)
CDR3 132..136 CDD:409353 1/3 (33%)
Ig strand G 136..145 CDD:409353 3/9 (33%)
FR4 138..145 CDD:409353 1/6 (17%)
Ig_3 148..218 CDD:404760 32/84 (38%)
Ig strand A' 155..160 CDD:409353 2/4 (50%)
Ig strand B 166..173 CDD:409353 3/6 (50%)
Ig strand C 179..184 CDD:409353 4/17 (24%)
Ig strand D 190..193 CDD:409353 0/2 (0%)
Ig strand E 197..203 CDD:409353 2/5 (40%)
Ig strand F 210..217 CDD:409353 3/6 (50%)
Ig strand G 224..232 CDD:409353 2/7 (29%)
Ig_3 235..311 CDD:404760 16/83 (19%)
Ig strand B 252..256 CDD:409353 1/3 (33%)
Ig strand C 265..269 CDD:409353 0/3 (0%)
Ig strand E 290..294 CDD:409353 1/10 (10%)
Ig strand F 304..309 CDD:409353 2/4 (50%)
Ig strand G 318..321 CDD:409353 0/2 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337156
Domainoid 1 1.000 59 1.000 Domainoid score I10374
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 142 1.000 Inparanoid score I4382
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 1 1.000 - - FOG0000150
OrthoInspector 1 1.000 - - mtm8971
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X97
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.800

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