DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-beta and Dscam4

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster


Alignment Length:329 Identity:78/329 - (23%)
Similarity:128/329 - (38%) Gaps:48/329 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 PDFVIPLENVT--IAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVAWIKADAKAILAIHEHVITN 160
            |..::|::.:|  :.:|..|..:|.:       :.||   .|....| :.:.|.::.....|...
  Fly   610 PPKIMPIQAMTNMLREGMRAAISCQI-------LEGD---LPVSFRW-ERNGKPLIGTGNEVFRR 663

  Fly   161 NDRLSVQHNDYNTWTLNIRGVKMEDAGKYMC-QVNTDPMKMQTATLEVVIPPDIINEETSGDMMV 224
            .|..|.        :|.|..:..:.:|.|.| ..|....:..|..|.|.:||..|.|..  |...
  Fly   664 LDEYSA--------SLVIEHISSDHSGNYTCIASNVAGTERFTVPLTVNVPPKWILEPK--DSSA 718

  Fly   225 PEGGSAKLVCRARGHPKPKITWRREDGREIIARNGSHQ----KTKAQSVEGEMLTLSKITRSEMG 285
            ..|....|.|::.|:|.|.|||::..|    ...|.::    :...|......:...||::...|
  Fly   719 QAGADVLLHCQSSGYPTPTITWKKAIG----PTPGEYKDFLYEPTVQLFPNGTIFFKKISKESQG 779

  Fly   286 AYMCIASNGVPPTVSKRMKLQVHFHPLVQVPNQLVGAPVLTDVTLICNVEASPKAINYWQRENGE 350
            .::|.|.|.:...|||.:.|:|:.....|...:.:.......|.:.|||:........|:     
  Fly   780 HFLCEAKNNIGSGVSKVIFLKVNVPAHFQTKTKQISVAKGKQVHVQCNVQGDNPIDFKWK----- 839

  Fly   351 MIIAGDRYALTEKENNMYAIE-------MI--LHIKRLQSSDFGGYKCISKNSIGDTEGTIRLYE 406
             |.|..:| |.|..::.|.|.       |:  |.|......|.|.|.|.:.|:.|..|.:|:|..
  Fly   840 -IQATQQY-LDESLDSRYTIRDQVLDDGMVSELGISHTYRQDTGIYICQASNAFGQDEMSIQLIV 902

  Fly   407 MERP 410
            .|.|
  Fly   903 QEVP 906

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 23/113 (20%)
ig 102..195 CDD:278476 18/95 (19%)
IG_like 219..307 CDD:214653 23/91 (25%)
Ig 221..307 CDD:299845 23/89 (26%)
Ig 311..404 CDD:299845 24/101 (24%)
IG_like 327..405 CDD:214653 23/86 (27%)
Dscam4NP_001261571.1 Ig 31..124 CDD:416386
Ig strand A 32..35 CDD:409353
Ig strand A' 41..45 CDD:409353
Ig strand B 48..57 CDD:409353
Ig strand D 75..78 CDD:409353
Ig strand E 83..88 CDD:409353
Ig strand F 101..109 CDD:409353
Ig strand G 112..124 CDD:409353
Ig 235..326 CDD:416386
Ig strand A 235..238 CDD:409353
Ig strand A' 244..248 CDD:409353
Ig strand B 251..258 CDD:409353
Ig strand C 266..271 CDD:409353
Ig strand C' 276..279 CDD:409353
Ig strand D 285..289 CDD:409353
Ig strand E 292..298 CDD:409353
Ig strand F 305..313 CDD:409353
Ig strand G 316..326 CDD:409353
IgC2_3_Dscam 329..417 CDD:409549
Ig strand B 347..351 CDD:409549
Ig strand C 360..364 CDD:409549
Ig strand E 383..387 CDD:409549
Ig strand F 397..402 CDD:409549
Ig strand G 410..413 CDD:409549
IgI_4_Dscam 422..516 CDD:409548
Ig strand B 439..443 CDD:409548
Ig strand C 452..456 CDD:409548
Ig strand E 482..486 CDD:409548
Ig strand F 496..501 CDD:409548
Ig strand G 509..512 CDD:409548
IgI_5_Dscam 520..607 CDD:409550
Ig strand B 536..540 CDD:409550
Ig strand C 549..553 CDD:409550
Ig strand E 571..575 CDD:409550
Ig strand F 586..591 CDD:409550
Ig strand G 600..603 CDD:409550
Ig 610..703 CDD:416386 22/111 (20%)
Ig strand A 611..613 CDD:409353 0/1 (0%)
Ig strand A' 620..624 CDD:409353 1/3 (33%)
Ig strand B 627..636 CDD:409353 2/15 (13%)
Ig strand C 641..648 CDD:409353 2/7 (29%)
Ig strand C' 650..652 CDD:409353 0/1 (0%)
Ig strand D 659..664 CDD:409353 1/4 (25%)
Ig strand E 668..675 CDD:409353 3/14 (21%)
Ig strand F 682..690 CDD:409353 3/7 (43%)
Ig strand G 693..702 CDD:409353 1/8 (13%)
IgI_7_Dscam 706..801 CDD:409546 27/100 (27%)
Ig strand B 724..728 CDD:409546 1/3 (33%)
Ig strand C 737..741 CDD:409546 2/3 (67%)
Ig strand E 766..770 CDD:409546 0/3 (0%)
Ig strand F 780..785 CDD:409546 1/4 (25%)
Ig strand G 794..797 CDD:409546 2/2 (100%)
Ig 818..904 CDD:416386 24/92 (26%)
putative Ig strand B 820..827 CDD:409353 1/6 (17%)
putative Ig strand C 835..841 CDD:409353 1/11 (9%)
putative Ig strand C' 853..856 CDD:409353 0/2 (0%)
putative Ig strand D 862..866 CDD:409353 0/3 (0%)
putative Ig strand E 868..874 CDD:409353 2/5 (40%)
putative Ig strand F 881..889 CDD:409353 3/7 (43%)
putative Ig strand G 892..902 CDD:409353 4/9 (44%)
FN3 906..999 CDD:238020 1/1 (100%)
FN3 1006..1110 CDD:238020
fn3 1117..1203 CDD:394996
FN3 1215..1307 CDD:238020
Ig <1334..1401 CDD:416386
Ig strand C 1345..1349 CDD:409353
Ig strand D 1363..1366 CDD:409353
Ig strand E 1367..1372 CDD:409353
Ig strand F 1380..1388 CDD:409353
Ig strand G 1394..1401 CDD:409353
FN3 1405..1494 CDD:238020
FN3 1499..1580 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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