DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-beta and rig-3

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_509155.1 Gene:rig-3 / 180958 WormBaseID:WBGene00004370 Length:487 Species:Caenorhabditis elegans


Alignment Length:512 Identity:100/512 - (19%)
Similarity:170/512 - (33%) Gaps:138/512 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 LLLLLGNCIDLTVSNKISSVGAFEPD-FVIPLE-------NVTIAQGRDATFTCVVNN------- 123
            :|..|..|:.::..:...|..:.|.: .||..|       .:|:.:|:....:||..:       
 Worm     8 MLFPLAMCLFVSAVSASDSPSSNEANPIVISSEAMDYDTNTITVREGKKLMVSCVFESDEQIHKS 72

  Fly   124 ------LGGHRVSGDGSSAPAKVAWIKADAKAILAIHEHVITNNDRLSVQHNDYNTWTLNIRGVK 182
                  ..|:.:  ||.|.|:..:.|                    |:.:.:.:...:|:...|.
 Worm    73 DLLWKQANGNNI--DGESNPSLFSVI--------------------LNEKGSKHRKTSLHFSSVH 115

  Fly   183 MEDAGKYMCQVNTDPMKMQTATLEVVIPPDI---INEETSGDMMVPEGGSAKLVCRARG--HPKP 242
            ..|.|.|.|...|...:....|:::|:.|.|   ..:...|.::   |....:.|..:|  ..:|
 Worm   116 TRDTGLYTCTGRTAGGENFEKTIKLVVLPAIEWNDKDTVKGALL---GEPITIDCGVKGPSGKEP 177

  Fly   243 KITWRREDG----REIIARNGSHQKTKAQSVEGEMLTLSKITRSEMGAYMCIASNGVPPTVSKRM 303
            .|.....:|    .||....|:.....:...|...||:|.|| .||  :...:....|....|.:
 Worm   178 MIQMTNGNGEPLDEEIWTIAGNEATIDSLKKEHAELTVSCIT-IEM--HQETSKEEFPVVDRKDV 239

  Fly   304 KLQVHFHPLVQVPNQLVGAPV---LTDVTLICNVEAS-PKAINYWQRENGEMIIAGDRYALTEKE 364
            .::|:..|..:....:....:   :.|..:.|||..| |...:|......|.|...|::      
 Worm   240 NIEVYTLPEFETEESVQYTVIDNHVRDAIIYCNVTHSFPPVRHYTFYHGDEEIKMSDKF------ 298

  Fly   365 NNMY---AIEMILHIK--RLQSSDFGGYKCISKNSIGDTEGTIRLYEMERPGKKILRDDDLNEVS 424
             |::   .:....|:|  .:..:|.|.|||.:.|....:..||.|.|...|.:            
 Worm   299 -NIFVNVGVSQGAHLKIHNVNENDLGTYKCEANNIKAKSYHTIHLREANAPAE------------ 350

  Fly   425 KNEVVQKDTRSEDGSRNLNGRLYK----DRAPDQHPASGSDQLLGRGTMRLIGTFLLALLVLFTA 485
                 .|.|..||...::   ::|    ||.||....:...:.|..||                 
 Worm   351 -----PKVTLIEDKRHSI---IWKVESIDRDPDLPMTAVEIRHLRAGT----------------- 390

  Fly   486 LAEAGPTTLSCRTKGGRQKKAKETSWNG------RRARD-------GREDGHAAEWR 529
             |||         .|...:...:..|..      |..:|       |...||...||
 Worm   391 -AEA---------SGVSDEDISDAYWKSHSIFMQRNIKDDGIYEINGLRHGHEYVWR 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 22/131 (17%)
ig 102..195 CDD:278476 19/112 (17%)
IG_like 219..307 CDD:214653 20/93 (22%)
Ig 221..307 CDD:299845 19/91 (21%)
Ig 311..404 CDD:299845 22/101 (22%)
IG_like 327..405 CDD:214653 21/83 (25%)
rig-3NP_509155.1 IG_like 48..142 CDD:214653 19/115 (17%)
Ig 267..341 CDD:319273 19/80 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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