DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-beta and rig-5

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001251131.1 Gene:rig-5 / 172791 WormBaseID:WBGene00004372 Length:482 Species:Caenorhabditis elegans


Alignment Length:428 Identity:138/428 - (32%)
Similarity:211/428 - (49%) Gaps:60/428 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 ASGSGLVGLGTGTGTGSGCGPAIRWQLL----------LLLLLGNCIDLTVSNKISSVGAFEPDF 100
            |..|.|.|..|..|.|       |:.:|          |..||  |..|.|..:..|.|| .|..
 Worm    32 ARDSALSGAPTFRGRG-------RFVILFHIPLQEKMYLFALL--CGVLLVFKQACSRGA-PPTI 86

  Fly   101 VIPLENVTIA-QGRDATFTCVVNNLGGHRVSGDGSSAPAKVAWIKADA-KAILAIHEHVITNNDR 163
            ..|..:..:| .|:|..|||:||:||.|           .||::|||: ..:|:..|.|....::
 Worm    87 QQPSMSSAVALLGQDVDFTCIVNDLGSH-----------MVAFVKADSPPRLLSFDEKVFRRRNK 140

  Fly   164 LSVQ------HNDYNTWTLNIRGVKMEDAGKYMCQVNTDPMKMQTATLEVVIPPDIINEETSGDM 222
            ..::      ||:   |.|.|:.|:..|.|.|.||:||:|:.:.|..|:|.:|| :::..|...:
 Worm   141 YELKPRIGDLHNE---WVLTIKNVQESDRGNYSCQINTEPITLSTGELDVKVPP-VVSRSTPAAV 201

  Fly   223 MVPEGGSAKLVCRARGHPKPKITWRREDGREIIARNGSHQKTKAQSVEGEMLTLSKITRSEMGAY 287
            .|.||.:..|.|:|.|:|.|.:.|||:| |:||..||: ....|....|.:|.|:|::|..|..|
 Worm   202 EVREGNNVSLTCKADGNPTPTVIWRRQD-RQIIRYNGA-TGFGASVFHGPVLHLTKVSRKHMSEY 264

  Fly   288 MCIASNGVPPTVSKRMKLQVHFHPLVQVPNQLVGAPVLTDVTLICNVEASPKAINYWQRENGEMI 352
            :|:||||:||..|..:||.|.|.||||..::.|.|.|.:...::|..||.|:....|::: ||.:
 Worm   265 LCVASNGIPPDESWTVKLLVTFPPLVQAQSETVQASVGSMARMVCTTEAWPRPEMGWEKD-GEPV 328

  Fly   353 IAGDRYALTEKENNMYAIEMILHIKRLQSSDFGGYKCISKNSIGDTEGTIRLYEMER-------- 409
            ...:..|:|...:..|....||.|:.:|||.||.|:|::||..|.....:.|.::..        
 Worm   329 YESNNVAMTHTVSGQYHSVHILEIRNVQSSHFGVYRCVAKNDNGIHHSQVTLNQISHNHFTNSNL 393

  Fly   410 --PGKKILR----DDDLNEVSKNEVVQKDTRSEDGSRN 441
              .|..:.|    ||:.:|...|...||:...|:.|::
 Worm   394 IPEGSGMPRGYSEDDEADEEEDNLENQKNDSEEEDSQS 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 38/118 (32%)
ig 102..195 CDD:278476 31/100 (31%)
IG_like 219..307 CDD:214653 36/87 (41%)
Ig 221..307 CDD:299845 36/85 (42%)
Ig 311..404 CDD:299845 30/92 (33%)
IG_like 327..405 CDD:214653 23/77 (30%)
rig-5NP_001251131.1 IG_like 92..189 CDD:214653 36/110 (33%)
Ig_3 191..270 CDD:372822 30/81 (37%)
IG 294..380 CDD:214652 26/86 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165770
Domainoid 1 1.000 77 1.000 Domainoid score I5731
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 196 1.000 Inparanoid score I2513
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 1 1.000 - - FOG0000150
OrthoInspector 1 1.000 - - otm14489
orthoMCL 1 0.900 - - OOG6_122504
Panther 1 1.100 - - O PTHR12231
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R16937
SonicParanoid 1 1.000 - - X97
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.930

Return to query results.
Submit another query.