DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-beta and ncam1b

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_005157462.1 Gene:ncam1b / 114442 ZFINID:ZDB-GENE-010822-2 Length:1055 Species:Danio rerio


Alignment Length:514 Identity:107/514 - (20%)
Similarity:187/514 - (36%) Gaps:119/514 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 LLLLLLLGNCIDLTVSNKISSVGAFEPDFVIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGSSA 136
            :|:||...|.:.|.|.             :.|... .|:.|....|.|.|  :||.:        
Zfish     8 ILVLLFFDNAVSLQVD-------------ITPAHG-EISVGESRFFLCEV--IGGAK-------- 48

  Fly   137 PAKVAWIKADAKAILAIHEHVITNNDRLSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNTDPMKMQ 201
              ::.|.....       |.:......:||..||..:.||.|...|:::||.|.|..::.....:
Zfish    49 --EIDWFAPAG-------EKIEPGRPDISVIRNDETSSTLTIYNAKVDNAGTYRCVASSGDQDAE 104

  Fly   202 TATLEVVIPPDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGREIIARNGSHQKTKA 266
             ||:.:.|...|............||.:|.:||.....|.|.:.|:.:.     |:....:..:.
Zfish   105 -ATVNLKIYQKITFTNVPSPQEFTEGDNAIIVCDVISSPPPTVLWKYKG-----AKIQFDKDVRF 163

  Fly   267 QSVEGEMLTLSKITRSEMGAYMC---IASNGVPPTVSKRMKLQVHFHPLVQVPNQLVGAPVL--- 325
            :::....|.:..|.:::.|.|.|   |.:.|           :|.|..:..|.|.|   |.:   
Zfish   164 KTLSNNHLQIRGIRKTDEGVYTCEGRIKARG-----------EVDFRSIKVVVNVL---PTIRIR 214

  Fly   326 ---TDVT--------LICNVEASPKAINYWQRENGEMIIAGDRYALTEKENNMYAIEMILHIKRL 379
               |:.|        |.|:.:..|:.|..|:|.|.. :.:|::|:..|..:.|    .:|.:.:|
Zfish   215 QAETNATADMGFSTLLACDPDGFPEPIVTWRRNNAP-LESGNKYSFNEDGSEM----TVLDVTKL 274

  Fly   380 QSSDFGGYKCISKNSIGDTEGTIRLYEMERPGKKILRDDDLNEVSKNEVVQKDTRSE-------- 436
               |.|.|.||:||..|::|..:.|....:|....|......|:.:...:..:...:        
Zfish   275 ---DEGDYTCIAKNKAGESEQELSLKVFVQPKITYLESQTTTEMDEQVTLTCEATGDPTPTITWS 336

  Fly   437 -------DGSRNLNGRLYKD--RAPDQHPASGSD-QLLGRGTMRLIGTFLLALLVLFTALAEAGP 491
                   :|.:....|:|:.  ..|:||  .|.| ::|.|...|     :.:|.:.:....:||.
Zfish   337 FGTRVFTEGEQEQQKRIYQASWTRPEQH--KGPDGEVLVRSDAR-----VSSLTLKYPQYTDAGQ 394

  Fly   492 TTLSCRTKGGR--QKKAKET-------------SWNGRRARDGRED-GHAAEWRQCWER 534
            ...:.|...|.  |..:.|.             :|.|..|....|. .|.::....|.|
Zfish   395 YLCTARNAIGETVQPVSLEVRYAPKILGSVAVYTWEGNPANISCEVLAHPSDVSITWLR 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 24/110 (22%)
ig 102..195 CDD:278476 22/92 (24%)
IG_like 219..307 CDD:214653 16/90 (18%)
Ig 221..307 CDD:299845 16/88 (18%)
Ig 311..404 CDD:299845 28/106 (26%)
IG_like 327..405 CDD:214653 23/85 (27%)
ncam1bXP_005157462.1 Ig 20..112 CDD:299845 26/125 (21%)
I-set 21..111 CDD:254352 25/123 (20%)
IG_like 121..205 CDD:214653 18/99 (18%)
IGc2 128..189 CDD:197706 14/65 (22%)
Ig 208..301 CDD:299845 27/103 (26%)
I-set 212..298 CDD:254352 25/93 (27%)
I-set 298..414 CDD:254352 20/122 (16%)
Ig 300..414 CDD:299845 20/120 (17%)
IG_like 426..505 CDD:214653 7/28 (25%)
Ig 434..505 CDD:143165 5/20 (25%)
FN3 513..606 CDD:238020
FN3 629..720 CDD:238020
Chorion_3 <815..1019 CDD:253174
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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