DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-beta and ncam2

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_571905.1 Gene:ncam2 / 114441 ZFINID:ZDB-GENE-010822-1 Length:795 Species:Danio rerio


Alignment Length:487 Identity:121/487 - (24%)
Similarity:191/487 - (39%) Gaps:116/487 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 IRWQLLLL-LLLGNCIDLTVSNKISSVGAFEPDFVIPLENVTIAQGRDATFTCVVNNLGGHRVSG 131
            ||..|..| ||:|           .|.||.:..  |.|:.|.::.|....|||.|  :|      
Zfish     2 IRTVLCFLGLLVG-----------GSQGALQVS--ISLKKVELSVGESKFFTCTV--IG------ 45

  Fly   132 DGSSAPAKVAWIKADAKAILAIHEHVITNNDRLSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNTD 196
                .|.|:.|.....:.::|        :.|::: ||:.....|.:...|:||||.|.||. ||
Zfish    46 ----EPVKLEWFNPQGERMVA--------SPRVAL-HNEGIRSRLTLYNAKIEDAGIYRCQA-TD 96

  Fly   197 PMKMQTATLEVVIPPDIINEETSGDMMVP----EGGSAKLVCRARGHPKPKITWRREDGREIIAR 257
               .|..|.|..:..:|..:.|..|:..|    :|..|::||.....|.|.::| ..:..||   
Zfish    97 ---AQGETQEATVVLEIYQKLTFRDVRSPQEFRQGEVAEVVCDVTSSPVPVVSW-FYNNIEI--- 154

  Fly   258 NGSHQKTKAQSVEGEMLTLSKITRSEMGAYMCIASNGVPPTVS-KRMKLQVHFHPLVQVPNQLVG 321
              :....|.:.::...|.:.|:|:::.|.|.|.|.......:. :.:.|.|:..|:|.||.|...
Zfish   155 --TEDTEKFELLQNNNLQVQKVTKADEGVYRCEARVEARGEIDFRNIILVVNVPPVVSVPQQSFN 217

  Fly   322 APV--LTDVTLICNVEASPKAINYWQRENGEMIIAGDRYALTEKENNMYAIEMILHIKRLQSSDF 384
            |..  ...||..|....||:....|.|: |..:...:||.       |.|....|.::.:|..|.
Zfish   218 ATADYGESVTFTCRAYGSPEPDVTWHRK-GVQLQESERYV-------MRARGTTLTVRNIQQDDG 274

  Fly   385 GGYKCISKNSIGDTEGTIRLYEMERPGKKILRD-----------------DDLNEVSKNEVVQKD 432
            |.|.|.:.|..|:.|..:.|....:|....||:                 :.|.|:|..      
Zfish   275 GSYTCRASNKAGEVEHELFLKVFVQPHITKLRNVTAVEGSAAMISCKAEGEPLPEISWR------ 333

  Fly   433 TRSEDGSRNLNGRLYKDRAPDQHPASGSDQLLGRGTMRLIGTFLLALLVLFTALAEAGPTTLSCR 497
             |:.||....:|    |::||     |..::.||     .|..:|.::|:  .|::.|.......
Zfish   334 -RASDGHSFSDG----DKSPD-----GRVEVRGR-----YGESMLTIVVV--KLSDWGRFDCEAL 381

  Fly   498 TK-GGRQK------------KAKET---SWNG 513
            :: ||.||            :|..|   ||.|
Zfish   382 SRIGGHQKSMFLDIEYAPKFQANHTIFFSWEG 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 30/110 (27%)
ig 102..195 CDD:278476 25/92 (27%)
IG_like 219..307 CDD:214653 20/92 (22%)
Ig 221..307 CDD:299845 20/90 (22%)
Ig 311..404 CDD:299845 27/94 (29%)
IG_like 327..405 CDD:214653 21/77 (27%)
ncam2NP_571905.1 Ig1_NCAM-2 20..111 CDD:143274 30/117 (26%)
I-set 21..110 CDD:254352 30/115 (26%)
IGc2 127..187 CDD:197706 16/65 (25%)
Ig 213..299 CDD:299845 24/93 (26%)
I-set 213..296 CDD:254352 24/90 (27%)
Ig 298..395 CDD:299845 25/119 (21%)
I-set 300..393 CDD:254352 25/115 (22%)
IG_like 411..488 CDD:214653 2/3 (67%)
IGc2 412..480 CDD:197706 1/2 (50%)
FN3 494..586 CDD:238020
fn3 <616..675 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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