DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-beta and chl1b

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_017212175.2 Gene:chl1b / 100318566 ZFINID:ZDB-GENE-091105-1 Length:1294 Species:Danio rerio


Alignment Length:487 Identity:102/487 - (20%)
Similarity:174/487 - (35%) Gaps:106/487 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 PDFVIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVAWIKADAKAILAIHEHVITNND 162
            |:|.|..::..:..|.|....|||.          |:..|. |.| :.:.:.:    ..|.|:|.
Zfish   352 PEFEIEPQSQLVTIGADVLIKCVVK----------GNPQPT-VGW-RVNGRPL----NEVPTSNR 400

  Fly   163 RLSVQHNDYNTWTLNIRGVKMEDAGKYMCQ-VNTDPMKMQTATLEVVIPPDIINEETSGDMMVPE 226
            ::      ....|::|.....|::..|.|: .|.....:..|.:.::....:|..|.:...|..|
Zfish   401 KI------LKDGTISIHNANPENSAVYQCEATNKHGTILANANIMIMNIQPLILTENNLQYMAVE 459

  Fly   227 GGSAKLVCRARGHPKPKITWRREDGREIIARNGSHQKTKAQSVEGEMLT--------LSKITRSE 283
            |.|..:.|:....|...|||.:.|              .|.:||||..|        :..:.:.:
Zfish   460 GKSVVMHCKVFSSPASSITWSKAD--------------SANAVEGERFTVHQNGSLEIHNVMKED 510

  Fly   284 MGAYMCIASN-----GVPPTVSKRMKLQVHFHPLVQVPNQLVGAP----VL--TDVTLICNVEAS 337
            ||.|.|.|.|     .:..|:.            |:.|.::|..|    ||  |.:...|..|..
Zfish   511 MGEYSCFAQNTEGKVAIAATLE------------VKDPTRIVDPPRDLRVLAGTTIQFSCQPEFD 563

  Fly   338 PKAINYWQRENGEMIIAGDRYALTEKENNMYAIE-MILHIKRLQSSDFGGYKCISKNSIGDTEGT 401
            |..     .::.|::...|..||...|:..|.:| .:|.|..:...|.|.|.|:::..:......
Zfish   564 PSF-----GDDFEVLWEKDGIALNGSEDGRYILEDGVLEIINVSFGDQGFYACVARTPVDQDVAV 623

  Fly   402 IRLYEMERPGKKILRDDDLNEVSKNEVVQKDTRSEDGSRNLNGRLYKDRAPDQHPASGSDQLLGR 466
            .:|..::.|...  .|..|:|.:...|..:.|..:|.:.::...:.:.......|.|      .|
Zfish   624 AQLSVVDVPDPP--EDVILSEHNGRSVKLQWTPGDDHNSSITEFVLEFEESQHEPGS------WR 680

  Fly   467 GTMRLIGTFLLALLVLF---------TALAEAGPTTLSCRTKGGRQKKAKETSWNGRRARDGRED 522
            ..||:.|....|.|.|:         :|:.|.|.         ||..::.|.......|.|...:
Zfish   681 EMMRVPGNHHSAPLKLYGHVDYRFRVSAINEVGK---------GRPSQSTERYKTPASAPDKNPE 736

  Fly   523 GHAAEWRQCWERSALSWRRSAP-----PELDY 549
            ....|.....|.. ::|...:|     |.|:|
Zfish   737 NIKIEAHLPHEMD-INWEPLSPIEHNGPGLEY 767

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 22/111 (20%)
ig 102..195 CDD:278476 18/93 (19%)
IG_like 219..307 CDD:214653 23/100 (23%)
Ig 221..307 CDD:299845 23/98 (23%)
Ig 311..404 CDD:299845 23/99 (23%)
IG_like 327..405 CDD:214653 16/78 (21%)
chl1bXP_017212175.2 Ig 61..135 CDD:325142
Ig 138..231 CDD:325142
Ig 279..348 CDD:325142
Ig 366..438 CDD:325142 19/93 (20%)
IG 454..533 CDD:214652 23/104 (22%)
I-set 538..628 CDD:333254 22/94 (23%)
FN3 632..722 CDD:238020 21/106 (20%)
FN3 734..815 CDD:238020 7/35 (20%)
FN3 832..931 CDD:238020
fn3 942..1022 CDD:306538
FN3 1070..1142 CDD:214495
Bravo_FIGEY 1196..1279 CDD:316405
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.