DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-beta and dscaml1

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_005157551.1 Gene:dscaml1 / 100002762 -ID:- Length:2158 Species:Danio rerio


Alignment Length:661 Identity:136/661 - (20%)
Similarity:233/661 - (35%) Gaps:174/661 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VVKESGERIADISCSQ----EHTTKFSPKLSQVAKHRKLAQLEIASGSGLVGLG----------- 55
            |.::|..|.:..:.|.    .|....:|::.....:|..|:....|......:.           
Zfish   517 VARDSAHRASQYTLSDGSTVSHVNVTNPQIRDGGVYRCAARNSAGSAEYQARINVRGPPSIRAMR 581

  Fly    56 -----TGTGTGSGCGP------AIRWQLLLLLLLGNCIDLTVSN---KISSV------GAF---- 96
                 .|..|...|..      :|:|....:||..|...:...|   |:|.|      ||:    
Zfish   582 NITAVAGRNTFINCRVIGYPYYSIKWYKDGMLLPDNHRQVVYENGTLKLSDVQKGMDEGAYLCSV 646

  Fly    97 -----------------EPDFVIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVAWIK 144
                             .|..:.|.:....:.|:.....|||:       |||   .|.::.|.|
Zfish   647 LIQPQLSISQTVYVTVKVPPLIQPFDFPPTSIGKLMYIACVVS-------SGD---MPIRITWRK 701

  Fly   145 ADAKAILAIHEHVITNNDRLSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNTDPMKMQT-ATLEVV 208
            ..        :.:::....::::..::.: :|.|..|.::..|.|.|..:.|...:.: ..|.|.
Zfish   702 DG--------QEIVSGTAGVTIETKEFMS-SLQISKVSLKHNGNYTCIASNDAATVSSERQLIVT 757

  Fly   209 IPPDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRRE--------------DGREIIARNG 259
            :||....:..:.|.:.  |.|..|.|...|:|.||:.|:..              .||..|..||
Zfish   758 VPPRFRVQPNNQDGIY--GKSEVLNCSVEGYPPPKVVWKHAKGIGNPQQYHPVPLTGRIQILSNG 820

  Fly   260 SHQKTKAQSVEGEMLTLSKITRSEMGAYMCIASNGVPPTVSKRMKLQVHFHPLVQVPNQLVGAPV 324
            |             |.:..:...:.|.|:|.|||||...:||.|.|      .|::|..:...|.
Zfish   821 S-------------LLIRHVLEEDRGYYLCQASNGVGSDISKSMML------TVKIPAMITSHPN 866

  Fly   325 LT------DVTLICNVEASPKAINYWQRENGEMIIAGD---RYALTEKENNMYAIEMI--LHIKR 378
            .|      :..|.|........|..|:|  |:.:|..|   ||::|...|.. :.|:|  |.:|.
Zfish   867 TTMAIKGQNKELNCTARGEYPIIIRWER--GDTVIDPDRNPRYSITTSPNEK-SDEVISTLKLKP 928

  Fly   379 LQSSDFGGYKCISKNSIGDTEGTIRLYEMERPGKKILRDDDLNEVSKNEVVQKDTRSEDGSRNLN 443
            .:..|...:.|.:.||.|:..|.|:|...|.|....|   ::.||....:..:.|:..||:..:.
Zfish   929 AERGDSVFFSCHAINSYGEGRGLIQLTVQEPPDPPEL---EVREVKDRSMNLRWTQRFDGNSIIT 990

  Fly   444 GR--LYKDRAPDQHPASGSDQLLGRGTMRLIGTFLLALLVLFTALAEAGPTTL-SCR----TKGG 501
            ..  .||:::....        |...|.::..|...|.:|      |..|.:: |.|    .|.|
Zfish   991 SYDIEYKNKSDPWE--------LKHATRKISPTNNQANIV------ELHPASVYSIRMYSYNKIG 1041

  Fly   502 RQKKAKETSWNGRRARDGREDGHAAE----------WRQCWERS------------ALSWRRSAP 544
            |.:.:||.:.:   ..:...||...|          .|..|:..            .:.:|.:.|
Zfish  1042 RSQASKELTIS---TEEAPPDGPPMEVILQPMTSQSIRVTWKAPKKELQNGVIRGYQIGYRENGP 1103

  Fly   545 PELDYYSLIQL 555
            .....||::::
Zfish  1104 GSNGQYSIVEM 1114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 21/111 (19%)
ig 102..195 CDD:278476 17/92 (18%)
IG_like 219..307 CDD:214653 29/101 (29%)
Ig 221..307 CDD:299845 29/99 (29%)
Ig 311..404 CDD:299845 27/103 (26%)
IG_like 327..405 CDD:214653 23/82 (28%)
dscaml1XP_005157551.1 IG_like 112..184 CDD:214653
Ig 112..183 CDD:143165
Ig 194..287 CDD:299845
I-set 302..380 CDD:254352
IGc2 309..370 CDD:197706
IGc2 399..458 CDD:197706
I-set 477..571 CDD:254352 9/53 (17%)
Ig 477..567 CDD:299845 9/49 (18%)
IG_like 581..662 CDD:214653 14/80 (18%)
IGc2 588..646 CDD:197706 14/57 (25%)
Ig 684..751 CDD:143165 16/85 (19%)
IG_like 686..756 CDD:214653 17/88 (19%)
I-set 760..855 CDD:254352 30/115 (26%)
Ig7_DSCAM 778..855 CDD:143211 26/95 (27%)
IG_like 865..956 CDD:214653 26/93 (28%)
Ig 873..963 CDD:299845 26/92 (28%)
FN3 959..1053 CDD:238020 23/113 (20%)
FN3 1060..1157 CDD:238020 8/55 (15%)
FN3 1165..1271 CDD:238020
FN3 1276..1367 CDD:238020
IGc2 1392..1455 CDD:197706
FN3 1486..1559 CDD:238020
FN3 1573..1649 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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