DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hlc and DBP9

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_013378.1 Gene:DBP9 / 850982 SGDID:S000004266 Length:594 Species:Saccharomyces cerevisiae


Alignment Length:581 Identity:227/581 - (39%)
Similarity:330/581 - (56%) Gaps:61/581 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGK-DVVVRARTGSGKTATYALPLIQKILNS 74
            |....||.|:|:|:..:|:|.||||||.||||.|:.| |::.:|.||||||..|.:|:|:.||..
Yeast    19 FEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIETILEY 83

  Fly    75 KL---NASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALSESP 136
            |.   |..|.....::|.||:||.:|...|:|:||..|.|.:|..:|:...:|:|... .|.:.|
Yeast    84 KKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISSDMSDSVLST-LLMDQP 147

  Fly   137 DIVVATPANLLAYAEAG-SVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLP--PIYQAVLVS 198
            :|:|.||..||...:.. :.:.|..::.|||||.|||..:||:.|..::.::||  ...|..|:|
Yeast   148 EIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLNKIGEYLPLKKNLQTFLMS 212

  Fly   199 ATLTDDVVRMKGLCLNNPVTLKLEEPEL-VPQDQLSHQRILAEENDKPAILYALLKLRLIRGKSI 262
            |||.||:..:|.....:|..||..:.|: ..|::|....:...|.||..:.|.:.||.||:||::
Yeast   213 ATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTL 277

  Fly   263 IFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDE---------- 317
            ||||:|||.|:::|.:|||||::|:||||||.|.|.|.:.||||..|.::||:|:          
Yeast   278 IFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDE 342

  Fly   318 ----HHMEKPGGKS----ATNRKSPR-------SGDMESSASRGIDFQCVNNVINFDFPRDVTSY 367
                |:.|....||    ..|.|.|.       ..|.|...|||:||:.|..|:|||.|....||
Yeast   343 IEEGHNTENQEEKSLEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSY 407

  Fly   368 IHRAGRTARGNNKGSVLSF-VSMKE-SKVNDSVEKKLCDSFAAQEGEQIIKN------------- 417
            :||.||||||...|:.:|| |.:|| .|...|:.:      .|::.|:|:..             
Yeast   408 VHRVGRTARGGKTGTAISFVVPLKEFGKHKPSMLQ------TAKKDERILSRIIKQQSKLGLELQ 466

  Fly   418 -YQFKMEEVESFRYRAQDCWRAATRVAVHDTRIREIKIEILNCEKLKAFFEENKRDLQALRHDKP 481
             |:|..::||:||||.:|.:||.|:||:.:.|::|:|.|:|..||||..||||.::||:|||||.
Yeast   467 PYKFDQKQVEAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKE 531

  Fly   482 LRAIKVQSHLSDMPEYIVPKALKRVVGTSSSPVGASEAKQPRQSAAKAAFERQVN---DPL 539
            |...:||.||..:|:|::|:: .|..||....|....||: |.|..|....:..|   |||
Yeast   532 LHPARVQQHLKRVPDYLLPES-ARGNGTKVKFVPFHNAKK-RHSHKKGRVSKPKNGKVDPL 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 84/215 (39%)
DEXDc 24..231 CDD:214692 82/214 (38%)
HELICc 234..386 CDD:238034 73/176 (41%)
DBP9NP_013378.1 SrmB 16..589 CDD:223587 224/578 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346484
Domainoid 1 1.000 128 1.000 Domainoid score I1163
eggNOG 1 0.900 - - E2759_KOG0346
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6498
Inparanoid 1 1.050 366 1.000 Inparanoid score I371
Isobase 1 0.950 - 0 Normalized mean entropy S843
OMA 1 1.010 - - QHG53986
OrthoFinder 1 1.000 - - FOG0004019
OrthoInspector 1 1.000 - - oto100144
orthoMCL 1 0.900 - - OOG6_102730
Panther 1 1.100 - - LDO PTHR24031
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R293
SonicParanoid 1 1.000 - - X2772
TreeFam 1 0.960 - -
1615.740

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