DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hlc and AT5G05450

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_196164.1 Gene:AT5G05450 / 830428 AraportID:AT5G05450 Length:593 Species:Arabidopsis thaliana


Alignment Length:605 Identity:141/605 - (23%)
Similarity:245/605 - (40%) Gaps:132/605 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 QFHELE--LDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKIL 72
            :|.:||  |...|::|:.|..::..|.:|:..||||...|||.|.|.||||||..:.:||::.:.
plant    15 RFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILR 79

  Fly    73 NS-KLNASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALSESP 136
            .| ........|..|:::||:||..|...|.:..|.:...|..|. :..........:....|..
plant    80 RSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVL-LVGGREVKADMKIIEEEGC 143

  Fly   137 DIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSATL 201
            ::::.||..|....|...::|.:::|.|::||||.:...|:::....:|..||...:..|.|||.
plant   144 NVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQ 208

  Fly   202 TDDVVRMKGLCLNNPVTLKLE-EPELVPQDQLS--------HQRILAEENDKPAILYALLKLRLI 257
            |:.|..:....|.|||.:::. :.:.....||:        |...:..|.||.:.....|.::..
plant   209 TEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKSSQLVDLLIKNS 273

  Fly   258 RGKSIIFVNSIDRCYKV---RLFLEQF----GIRACVLNSELPANIRIHTISQFNKGTYDIIIAS 315
            ..|.|:|..:   |..|   .|.|.:.    .|....::.::..|.|...::.|.|.:...::.:
plant   274 DKKLIVFFMT---CASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKALASFTKASSGALLCT 335

  Fly   316 DEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNK 380
            |                         .|:||:|...::.|:.:|.|:|...:.||||||||...:
plant   336 D-------------------------VAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQ 375

  Fly   381 GSVLSFVSMKESKVND-------SVEKKLCDSFAAQEGEQIIKNYQFK----MEE-VESF----- 428
            |..:.|:..||....:       .:|::.| |..|.:...||::...|    ||: :::|     
plant   376 GRAIVFLLPKEEAYVEFMRIRRVPLEERKC-SEDASDVIPIIRSAAMKDRAVMEKGLKAFVSFVR 439

  Fly   429 RYRAQDC-----WR-----------------AATRVAVHD------TRIREIKIEILNCEKLKAF 465
            .|:...|     |:                 :.:.|..|.      |.:..:|.|.:   |.|..
plant   440 AYKEHHCSFIFRWKDLEIGKLAMGYGLLYLPSMSEVKQHRLSSEGFTPVEGVKFEEI---KFKDK 501

  Fly   466 FEENKRDLQALRHDKPLRAIKVQSHLSDMPEYIVPKALKRVVGTSSSPVGASEAKQPRQSAAKAA 530
            :.|.:|     :.:..:|..|.|....:       |..::.|..|:|                  
plant   502 YREKQR-----QQNLQVRKEKRQEEKKE-------KGKRKRVDASAS------------------ 536

  Fly   531 FERQVNDPLMASQVDFGKRR 550
                 |||..||:...||:|
plant   537 -----NDPKKASRKLTGKQR 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 64/211 (30%)
DEXDc 24..231 CDD:214692 58/208 (28%)
HELICc 234..386 CDD:238034 35/158 (22%)
AT5G05450NP_196164.1 SrmB 12..501 CDD:223587 124/518 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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