DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hlc and ddx10

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_001096151.1 Gene:ddx10 / 613047 XenbaseID:XB-GENE-985914 Length:852 Species:Xenopus tropicalis


Alignment Length:483 Identity:126/483 - (26%)
Similarity:215/483 - (44%) Gaps:94/483 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TQKTVQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQ 69
            |.:.|:|.:..|.::.|:.:.:..::.||.||...|.|.|:||||:..|:||||||..:.:|.::
 Frog    69 TSEIVKFSDFPLSKKTLRGLVEGQYRLPTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFIIPALE 133

  Fly    70 KILNSKLNASEQYVSAVVLAPTKELCRQSRKVIEQLVE----SCGKVVRVADIADSSNDTVTQRH 130
            .:...:. .|:..:..::::||:||..|:.:|:.::..    |.|.|:...|:        .|..
 Frog   134 CLYRQQW-TSDDGLGVLIISPTRELAYQTFEVLRKVGRNHEFSAGLVIGGKDL--------KQET 189

  Fly   131 ALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAV 195
            |.....:|::.||..||.:.:..|.....:::.||:||||.:...|:......::::||...|.:
 Frog   190 ACIHRTNILICTPGRLLQHMDETSTFHASNLQMLVLDEADRILDMGFADTMNAIVENLPKKRQTL 254

  Fly   196 LVSATLTDDVVRMKGLCLNNP------VTLKLEEPELVPQDQLSHQRILAEENDKPAILYALLKL 254
            |.|||.|..|..:..|.|.:|      ...|...|..:.|:.     ::.|...|..:||:.::.
 Frog   255 LFSATQTKSVKDLARLSLKDPEYVWVHENAKFSTPATLEQNY-----VVCELQQKINLLYSFIRN 314

  Fly   255 RLIRGKSIIFVNSIDRCYKVRLFLEQF-----GIRACVLNSELPANIRIHTISQFNKGTYDIIIA 314
            .| :.|||:|.:|   |.:|:.....|     ||...||:.:.....|:...:.|.:....::.|
 Frog   315 HL-KKKSIVFFSS---CKEVQYLFRAFCRLRPGIPVLVLHGKQQQMKRMEVYNDFIRKKSAVLFA 375

  Fly   315 SDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNN 379
            :|                         .|:||:||..||.|:..|.|.|..:||||.|||||...
 Frog   376 TD-------------------------IAARGLDFPAVNWVLQLDCPEDANTYIHRVGRTARYKE 415

  Fly   380 KGSVL----------SFVSMKESKVNDSVEK----KLCD------SFAAQEGEQIIKNYQFKMEE 424
            .|..|          .|..::|.||..:..|    ||.|      :|.|||              
 Frog   416 GGEALLVLLPSEVKGMFKQLEEKKVPINEIKINPEKLMDVQGRLEAFLAQE-------------- 466

  Fly   425 VESFRYRAQDCWRAATRVAVHDTRIREI 452
             :..:..||.|:.:..| :|:..:.:|:
 Frog   467 -QDLKETAQRCFVSYLR-SVYLMKNKEV 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 60/218 (28%)
DEXDc 24..231 CDD:214692 60/216 (28%)
HELICc 234..386 CDD:238034 43/166 (26%)
ddx10NP_001096151.1 SrmB 52..564 CDD:223587 126/483 (26%)
60KD_IMP <704..798 CDD:321001
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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