DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hlc and ddx24

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:XP_003200454.2 Gene:ddx24 / 553462 ZFINID:ZDB-GENE-100716-4 Length:803 Species:Danio rerio


Alignment Length:654 Identity:137/654 - (20%)
Similarity:252/654 - (38%) Gaps:195/654 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGK-DVVVRARTGSGKTATYALPLIQKILN- 73
            :.:|.:.:.:|:|:|.||:..||.||:..:|..:..: |::..|.||||||..:.:|:|..||. 
Zfish   207 WRDLLVPEPVLRALAVLGFSAPTAIQALVLPPAIRDRLDILGAAETGSGKTLCFGIPMIHMILQW 271

  Fly    74 -----------------SKLNASEQY--------------------------------------- 82
                             ..|...|::                                       
Zfish   272 REQTEEHSTPERTHTPAQSLYLQEEHGEDDDDDDDDDEKKDDEVIDDDEGGAEGCSAPPDDPDGQ 336

  Fly    83 ------------VSAVVLAPTKELCRQSRKVIEQLVESCG--KVVRVADIADSSNDTVTQRHALS 133
                        :..:||.||:||..|.:..|:.:.:..|  ..:.|..:|...     |...|.
Zfish   337 NDPDPASGVCRPLLGLVLTPTRELAVQVKHHIDAVAQFTGIKTAIVVGGMAPQK-----QHRVLM 396

  Fly   134 ESPDIVVATPANL--LAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIY---- 192
            ..|:|::|||..|  :...:...:.||:.:..||:||||.:...|:..:.:.|::.|....    
Zfish   397 RRPEIIIATPGRLWEMIREKHPHLQDLRQLRCLVLDEADRMVEKGHFAELESLLELLNTSQFSSR 461

  Fly   193 -QAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEE---NDKPAIL----- 248
             |..:.|||||        |..:.|..|:.::.:..|.:|.|..::|.|:   .|||.::     
Zfish   462 RQTFVFSATLT--------LVHSLPSRLQQKKKKQRPAEQRSKLQLLMEKVGVRDKPKVIDLTRK 518

  Fly   249 ------------------------YALLKLRLIRGKSIIFVNSIDRCYKVRLF--LEQFGIRACV 287
                                    |.||:   ..|:|::|.||| .|.| ||:  |........:
Zfish   519 QATVETLTETRISCTKEDKDLFLYYFLLQ---FPGRSMVFANSI-ACIK-RLYALLHLLDCTPLM 578

  Fly   288 LNSELPANIRIHTISQFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCV 352
            |::.:....|:..:.:|.:.|..:::.:|                         .|:||:|...|
Zfish   579 LHANMHQKQRLKNLERFAENTRCVLLTTD-------------------------VAARGLDIPDV 618

  Fly   353 NNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKESKVNDSVEKKLCDSFAAQEGEQIIK- 416
            .:||::..||...:|:||:|||||...:|..|..:| .:..:|   .:::|.:....|...:.. 
Zfish   619 QHVIHYQVPRTSETYVHRSGRTARATREGLSLLLIS-PDDLLN---YRRICRTLDKSEELPVFPV 679

  Fly   417 ------------NYQFKMEEVESFRYRAQDCWRAATRVAVHDTRIR------EIKIE---ILNCE 460
                        :...::|::|.|.          :|...|::.:|      :|.::   ::...
Zfish   680 ESKCMAAVKERVDLAHRIEKMEYFH----------SRQTQHNSWVRQAAEAMDIDVDDELLMGSS 734

  Fly   461 KLKAFFEENKRDLQALRHDKPLRAIKVQSHLSDMPEYIVPKAL-KRVVGTSSSPVGASEAKQPRQ 524
            |.:....|.:|:.|.||  |.|:.:..|.......:...|..: |.::.|.......:..||..|
Zfish   735 KGEDEEREQQREKQMLR--KQLKILISQPVFRSQMKTRYPTQMGKLLLPTLPQDTALASLKQDTQ 797

  Fly   525 SAAK 528
            |:.:
Zfish   798 SSTR 801

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 63/287 (22%)
DEXDc 24..231 CDD:214692 62/285 (22%)
HELICc 234..386 CDD:238034 43/185 (23%)
ddx24XP_003200454.2 PTZ00424 204..676 CDD:185609 114/515 (22%)
P-loop_NTPase 207..472 CDD:304359 59/269 (22%)
Helicase_C 535..643 CDD:278689 35/137 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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