DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hlc and Ddx56

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_080814.1 Gene:Ddx56 / 52513 MGIID:1277172 Length:546 Species:Mus musculus


Alignment Length:563 Identity:265/563 - (47%)
Similarity:364/563 - (64%) Gaps:39/563 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 QKTVQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
            |:.:.|..:.||.|:|:||..|||.:|||||..||||.|||||::.||||||||||.||:|::|.
Mouse     4 QEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQS 68

  Fly    71 ILNSKLN--ASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALS 133
            :|:.|..  ..||.|..:||.|||||.||::.:|:||...|.:.||||::: ::.|:.:||..|.
Mouse    69 LLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDVRVANVS-AAEDSASQRAVLM 132

  Fly   134 ESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVS 198
            |.||:||.||:.:|::.:..::.....:|.||||||||:|::|:|.:.|.|:.|||.||||.|:|
Mouse   133 EKPDVVVGTPSRVLSHLQQNTLKLRDSLELLVVDEADLLFSFGFEDELKSLLCHLPRIYQAFLMS 197

  Fly   199 ATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAE-ENDKPAILYALLKLRLIRGKSI 262
            ||..:||..:|.|.|:|||||||:|.:|...|||...:::.| |.||..:|||||||.|||||::
Mouse   198 ATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKAL 262

  Fly   263 IFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHM--EKPGG 325
            :|||:::|.|::|||||||.|.:||||.|||...|.|.|||||:|.||.:||:|...:  :..|.
Mouse   263 LFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGLYDCVIATDAEILGPQVKGK 327

  Fly   326 KSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMK 390
            :.....|..::.|.||..:|||||..|:.|:|||.|....:|:||||||||.||.|.||:||...
Mouse   328 RRGRGSKGNKASDPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPA 392

  Fly   391 ESKVNDSVEKKLCDSFAAQEGE-QIIKNYQFKMEEVESFRYRAQDCWRAATRVAVHDTRIREIKI 454
            |......:|..|     :.||| .|:..|||:|||:||||||.:|..|:.|:.|:.:.|::|||.
Mouse   393 EQPFLGKIEDLL-----SGEGEAPILLPYQFQMEEIESFRYRCRDAMRSVTKQAIREARLKEIKE 452

  Fly   455 EILNCEKLKAFFEENKRDLQALRHDKPLRAIKVQSHLSDMPEYIVPKALKRVVGTSSSPVGASEA 519
            |:|:.||||.:||:|.||||.||||.||....|:.||..:|:|:||.||:.:|            
Mouse   453 ELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPAALRGLV------------ 505

  Fly   520 KQPRQSAAKAAFER-----QVNDPLMASQVDFGKRRPAHRRKK 557
             .||:...|..|.|     :..:||.    ||     .||.||
Mouse   506 -HPRKKRRKVPFSRKAKKVKAQNPLR----DF-----KHRGKK 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 106/210 (50%)
DEXDc 24..231 CDD:214692 105/208 (50%)
HELICc 234..386 CDD:238034 79/154 (51%)
Ddx56NP_080814.1 Q motif 7..35 14/27 (52%)
SrmB 9..544 CDD:223587 264/558 (47%)
P-loop_NTPase 9..219 CDD:304359 106/210 (50%)
DEAD box 166..169 2/2 (100%)
HELICc 234..388 CDD:238034 79/153 (52%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 324..344 4/19 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 508..546 12/40 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850032
Domainoid 1 1.000 170 1.000 Domainoid score I3774
eggNOG 1 0.900 - - E2759_KOG0346
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6498
Inparanoid 1 1.050 477 1.000 Inparanoid score I1467
Isobase 1 0.950 - 0 Normalized mean entropy S843
OMA 1 1.010 - - QHG53986
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 1 1.000 - - FOG0004019
OrthoInspector 1 1.000 - - oto94809
orthoMCL 1 0.900 - - OOG6_102730
Panther 1 1.100 - - LDO PTHR24031
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R293
SonicParanoid 1 1.000 - - X2772
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1716.750

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