DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hlc and ddx51

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_001003864.1 Gene:ddx51 / 445387 ZFINID:ZDB-GENE-040927-28 Length:652 Species:Danio rerio


Alignment Length:504 Identity:128/504 - (25%)
Similarity:215/504 - (42%) Gaps:120/504 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSQ--MTQKTVQFHELELDQ------RILKAVAQLGWQQPTLIQSTAIPLLLEG----------- 46
            :||  :.||.::.:.:.:.:      .:|:.:...|.|....:|:..||.:||.           
Zfish   173 LSQPDVIQKDIKSNLIPISEVPGICPTLLRKLQTNGIQSFFPVQAEVIPAILESVGSGLLVGPGG 237

  Fly    47 ---KDVVVRARTGSGKTATYALPLIQKILNSKLNASEQYVSAVVLAPTKELCRQSRKVIEQLVE- 107
               :||.|.|.||||||..:.:|::|.:....:    :.|.|:.:.|||||.:|...|.....| 
Zfish   238 YRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVV----RQVRALAVLPTKELAQQVSNVFSAYTEG 298

  Fly   108 SCGKVVRVADIADSSNDTVTQRHALSE--------SPDIVVATPANLLAYAEAGSVVDLKHVETL 164
            |..|||.:.    .......::.||||        ..|||||||..|:.:....|...|:|:..|
Zfish   299 SSLKVVMIT----GQKSFAAEQTALSEIRGGVSHSMADIVVATPGRLVDHINKNSSFSLQHLRFL 359

  Fly   165 VVDEADLVFAYGYEKDFKRLIKHL--------------------------PP--IYQAVLVSATL 201
            ::||||.:....::....::.|.:                          ||  ..|.:|.||||
Zfish   360 IIDEADRMIDSMHQSWLSQVTKAVYSTPGETHTSVFRRTVPGPITAASLSPPQIPLQKLLFSATL 424

  Fly   202 TDDVVRMKGLCLNNP----VTLKLEEPELVPQDQLSHQRILAEE------NDKPAILYALLKLRL 256
            |.:..:::.|.|:.|    .|..|.:.....||.....:.|:|.      :.||.|:...| |||
Zfish   425 TQNPEKLQLLDLHQPRLFSSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHFL-LRL 488

  Fly   257 IRGKSIIFVNSIDRCYKVRLFLEQF-GIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHM 320
            ....::.|.||.:..:::.|.::.| |:.....:|:|....|..|:..|.||...::|::|    
Zfish   489 KFSPALCFTNSREGAHRLYLLVKLFGGVEVAEFSSKLSPGERQKTLKDFEKGKIPLLISTD---- 549

  Fly   321 EKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLS 385
                                 :|:||||...|..|||:|.|:.:.:||||.|||||....|...:
Zfish   550 ---------------------AAARGIDINGVKCVINYDAPQYIRTYIHRVGRTARAGKAGLAFT 593

  Fly   386 FVSMKESK-----VNDS----VEKKLCDSFAAQEGEQIIKNYQFKMEEV 425
            |:...:.|     |:|:    ::|:       ....:.:|:.:.:.|:|
Zfish   594 FLLKVQEKRFLKMVSDAGSPGIQKQ-------HVHPEALKSMESRYEQV 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 68/269 (25%)
DEXDc 24..231 CDD:214692 69/261 (26%)
HELICc 234..386 CDD:238034 45/158 (28%)
ddx51NP_001003864.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..145
P-loop_NTPase 195..439 CDD:304359 66/251 (26%)
DEXDc 204..451 CDD:214692 68/254 (27%)
Q motif 212..220 1/7 (14%)
DEAD box 362..365 2/2 (100%)
Helicase_C 475..586 CDD:278689 42/136 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.