DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hlc and abs

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_524220.1 Gene:abs / 40530 FlyBaseID:FBgn0015331 Length:619 Species:Drosophila melanogaster


Alignment Length:496 Identity:120/496 - (24%)
Similarity:209/496 - (42%) Gaps:91/496 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSK 75
            |.|::..:.||..:|..|.:.||.||...:|.:|.|:|::..|.||||||..:.||:|       
  Fly   179 FREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVI------- 236

  Fly    76 LNASEQYVS----------AVVLAPTKELCRQSRKVIEQL---VESCGKVVRVADIADSSNDTVT 127
            :.|.||..|          .:::.|::||.:|:.::|:..   :::||.....:.:|........
  Fly   237 MFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSE 301

  Fly   128 QRHALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIY 192
            ....:|....||||||..|:...:. .::.|.....|.:||||.:...|:|:|.:.:........
  Fly   302 ALDVISRGVHIVVATPGRLMDMLDK-KILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQR 365

  Fly   193 QAVLVSATLTDDVVRMKGLCLNNPVTLKL-----------EEPELVPQD-QLSHQRILAEENDKP 245
            |.:|.|||:...:.......|..|||:.:           ::.|.|.|: ::.:.....::...|
  Fly   366 QTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQKTAPP 430

  Fly   246 AILYALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYD 310
            .:::|..|            ..:| |....|.|:  |:.|..::.......|...:..:..|..|
  Fly   431 VLIFAEKK------------QDVD-CIHEYLLLK--GVEAVAIHGGKDQEERSRAVDAYRVGKKD 480

  Fly   311 IIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTA 375
            :::|:|                         .||:|:||..|.:|||:|.|.|:.:|:||.|||.
  Fly   481 VLVATD-------------------------VASKGLDFPNVQHVINYDMPDDIENYVHRIGRTG 520

  Fly   376 RGNNKGSVLSFVSMKESKVNDSVEKK-LCD-SFAAQEGEQIIKNYQFKMEEVESFRYRAQDCWRA 438
            |.|.||       :..:.:|.:.|:. |.| .....||:|.:.::..::......::........
  Fly   521 RSNTKG-------LATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQHLDLGDSHG 578

  Fly   439 ATRVAVHDTRIREIKIEILNCEKLKAFFEENKRDLQALRHD 479
            .|.......||.|       |.||:|.  :||:.....|.|
  Fly   579 CTYCGGLGHRITE-------CPKLEAV--QNKQASNIGRRD 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 62/221 (28%)
DEXDc 24..231 CDD:214692 61/231 (26%)
HELICc 234..386 CDD:238034 36/151 (24%)
absNP_524220.1 DEADc 179..393 CDD:238167 62/221 (28%)
DEXDc 192..397 CDD:214692 58/212 (27%)
Helicase_C 414..523 CDD:278689 33/148 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451773
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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