DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hlc and CG5589

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_649009.1 Gene:CG5589 / 39979 FlyBaseID:FBgn0036754 Length:594 Species:Drosophila melanogaster


Alignment Length:519 Identity:135/519 - (26%)
Similarity:221/519 - (42%) Gaps:104/519 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FHELELDQRILKAVAQ----LGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKI 71
            |..|..|.::|..:.|    ..:..||.||..|:|:||:.:.::..|.||||||..:..|:|..:
  Fly   117 FGTLTRDFKMLPRLQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGL 181

  Fly    72 LNSKLNASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGK----VVRVADIADSSNDTVTQRHAL 132
            ...|...    :.|:|||||:||.:|..:...:|....|.    :.:|::..........||:  
  Fly   182 RAHKTTG----LRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRY-- 240

  Fly   133 SESPDIVVATPANL-LAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQA-- 194
                ||:|:||..: ....:...::||.|||..|:||||.:...| :.:||   :.|..||.|  
  Fly   241 ----DILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEG-QNNFK---EQLDDIYAACS 297

  Fly   195 ------VLVSATLTDDVVRMKGLCLNNPVTLKL----EEPELVPQDQLSHQRILAEENDKPAILY 249
                  ...|||.|..|.:.....|.|.|.:.:    ...|.|.|:.|    .:..|..|...:.
  Fly   298 NPTKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELL----FVGSEGGKLVAIR 358

  Fly   250 ALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIA 314
            .|::..| :...::||.|.:|..::...|...||...|:::|...:.|.:.:..|.:|:..::|.
  Fly   359 DLVRQGL-QPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLIC 422

  Fly   315 SDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNN 379
            ::                         ...|||||:.||.|||:|||....|||||.|||.|...
  Fly   423 TE-------------------------LMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGR 462

  Fly   380 KGSVLSFVSMKESKVNDSVEKKLCDSFAAQEGEQIIKN-------YQFKMEEVESFRYRAQDCWR 437
            .|..::|.:.:::.....:             ..||||       |..:|::|.    :::...|
  Fly   463 PGRAITFFTQEDTSNLRGI-------------ALIIKNSGGTVPEYMLQMKKVR----KSEAKMR 510

  Fly   438 AATRVAVHD--TRIR-EIK-------IEILNCEKLKAFFEENK---RDLQALRHDKPLRAIKVQ 488
            |...:...|  |:|| |.|       .::...|:.:...:..|   :||.:  ..|.|..||.:
  Fly   511 AKKPLDREDISTKIRPETKGDEKHKSTKLKKVERTEKILKNRKGYEKDLNS--KQKKLGNIKTE 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 67/225 (30%)
DEXDc 24..231 CDD:214692 66/227 (29%)
HELICc 234..386 CDD:238034 40/151 (26%)
CG5589NP_649009.1 SrmB 87..594 CDD:223587 135/519 (26%)
P-loop_NTPase 123..329 CDD:304359 65/219 (30%)
HELICc 349..469 CDD:238034 40/145 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451742
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24031
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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