DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hlc and Gem3

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_001261678.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster


Alignment Length:582 Identity:131/582 - (22%)
Similarity:250/582 - (42%) Gaps:97/582 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSK 75
            |.||.|.:.:|..:.:..:..||.||:.|||:.|...|:::::::|:|||..|.:.::|. .|..
  Fly    27 FEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQS-FNPN 90

  Fly    76 LNASEQYVSAVVLAPTKELCRQSRKVIEQLVES-----CGKVVRVADIADSSNDTVTQRHALSES 135
            :|...    |:::.||:||..|.:.....|.:|     |...:...|:|       ..|..::||
  Fly    91 INQPH----AMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVA-------KDRKRMNES 144

  Fly   136 PDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVF-AYGYEKDFKRLIKHLPPIYQAVLVSA 199
             .:::.||..||...| ..|.|:..:..||:||||.:: ....:....:||:.:|...|.:..||
  Fly   145 -RVIIGTPGRLLHLYE-NRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQIIACSA 207

  Fly   200 TLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAILYALLKLRLI------- 257
            |...::.......::.|:.:...|...|..........|.::|:  ::....|||:::       
  Fly   208 TYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNN--SVEEMRLKLQILGQIFNQL 270

  Fly   258 -RGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHME 321
             ..::|||.:|..|....:.:|...||...:::..:..:.|:|....:...|..|::|:|     
  Fly   271 PYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVATD----- 330

  Fly   322 KPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSF 386
                                ..:||:|....|.|||.|.|:|..:|:||.||..|..:||..::|
  Fly   331 --------------------LMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITF 375

  Fly   387 V-SMKESKVNDSVEKKLCDSFAAQE--GEQIIKNYQFKMEEVESFRYRAQDCWRAATRVAVHDTR 448
            : |.|||:....:.||:..:::..|  .|.:...:.|...|..:|.|..::           :..
  Fly   376 IASKKESQRFREMSKKIATAWSVLEFPKEPMPNEFNFWDFEKYNFDYYIKE-----------ENP 429

  Fly   449 IREIKIEILNCEKLKAFFEENKRDLQALRHDK------------PLRAIKVQS--HLSDMPE--- 496
            ::|:.:.|.. .:.|...:.:..||:.|:.|:            .|..::.|.  .|.::||   
  Fly   430 LQEMPMPIKE-NRSKENVDASSVDLENLQKDQDGKRRDPDKLPVALENVETQKELELENLPESSH 493

  Fly   497 -----YIVPKALKR---VVGTSSSPVGASEAKQPR--QSAAKAAFERQVNDPLMASQVDFGK 548
                 .:..|.:.|   :..|:|...|:...|..|  :|...:..::|:.:.....::...|
  Fly   494 NNKNLRVKEKEIVRQGKLKETNSKAGGSKTNKTERRKKSNTPSKLQKQITEVQQTPEITVNK 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 57/214 (27%)
DEXDc 24..231 CDD:214692 54/212 (25%)
HELICc 234..386 CDD:238034 37/159 (23%)
Gem3NP_001261678.1 SrmB 24..541 CDD:223587 129/566 (23%)
P-loop_NTPase 27..228 CDD:304359 57/214 (27%)
Helicase_C 259..367 CDD:278689 32/132 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451719
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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