DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hlc and Dbp45A

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_476927.1 Gene:Dbp45A / 35917 FlyBaseID:FBgn0010220 Length:521 Species:Drosophila melanogaster


Alignment Length:595 Identity:143/595 - (24%)
Similarity:242/595 - (40%) Gaps:128/595 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSK 75
            |..|.|...::|.:.:||.:..|.||...||.:|.|:|.:..|:||||||..:|||:::::    
  Fly     9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERL---- 69

  Fly    76 LNASEQYVS--AVVLAPTKELCRQSRKVIEQ-LVESCGKVVRVADIADSSNDTVTQRHALSESPD 137
               ||:.||  |:||.||.||..|   :.|| ||......|||. :.....|.:.:...|.:.|.
  Fly    70 ---SEEPVSHFALVLTPTHELAYQ---ISEQFLVAGQAMGVRVC-VVSGGTDQMVESQKLMQRPH 127

  Fly   138 IVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSATLT 202
            ||||.|..|..:..........:::.|||||||.:....:::....:.:.||...|.:..|||:.
  Fly   128 IVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNLFFSATMK 192

  Fly   203 DDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAILY-ALLKLRLIRGKS--IIF 264
            |.:.......:.:......::.::...:.|..:.:|..:.|:..:|. ||.|.|.....:  :||
  Fly   193 DFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYREENENANVMIF 257

  Fly   265 VNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHMEKPGGKSAT 329
            .|:...|..:.:.|:...|....|:..:....|:..:|:|.......:||:|             
  Fly   258 TNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIATD------------- 309

  Fly   330 NRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLS--------- 385
                        .|:||:|...|..|:|...||....||||.|||||...||..:|         
  Fly   310 ------------VAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLE 362

  Fly   386 FVSMKESKVNDS-----VEKKLCDSFAAQ------EGEQIIKNYQFKMEEVESFRYRAQDCWRAA 439
            .::..|.::|..     :::::.:....|      |.|..:.|..|. |..:::|.:        
  Fly   363 LLAAIEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFD-ERAQNYRRK-------- 418

  Fly   440 TRVAVHDTRIREIKIEILNCEKLKAFFEENKRD-LQALRHDKPLRAIKVQSHLSDMPEYIVPKAL 503
                   |.|.|.|    :.::::|.:.:.::| |:.:|..:.|:                    
  Fly   419 -------TWIMEGK----DPDQMEALYRKKQKDKLREIRRKRKLQ-------------------- 452

  Fly   504 KRVVGTSSSPVGASEAKQPRQ-----SAAKAAFERQVNDPLMASQVD--------FGKRRP---- 551
                  .:.|..:.|.|...|     |...|.||::......|:|.|        ..|.:|    
  Fly   453 ------HAEPAASEEGKALLQDERFKSVDSARFEKKGKGRSRATQEDTPTKPLKRLNKEKPVAQK 511

  Fly   552 --AHRRKKKA 559
              |..:|.||
  Fly   512 GRADVKKDKA 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 66/211 (31%)
DEXDc 24..231 CDD:214692 62/209 (30%)
HELICc 234..386 CDD:238034 41/163 (25%)
Dbp45ANP_476927.1 SrmB 8..490 CDD:223587 134/562 (24%)
DEADc 9..197 CDD:238167 66/198 (33%)
Helicase_C 239..346 CDD:278689 35/131 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451692
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24031
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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