DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hlc and Ddx18

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_001006997.1 Gene:Ddx18 / 308490 RGDID:1549712 Length:674 Species:Rattus norvegicus


Alignment Length:531 Identity:138/531 - (25%)
Similarity:233/531 - (43%) Gaps:105/531 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKLNASE 80
            :::..|||:.::|::..|.||..:|..||||:|::..|:||||||..:.:|:|:.|:..|. ...
  Rat   190 VNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKF-MPR 253

  Fly    81 QYVSAVVLAPTKELCRQSRKVIEQL----VESCGKVVRVADIADSSNDTVTQRHALSESPDIVVA 141
            .....::|:||:||..|:..|:::|    |.:.|.:     :..|:.....|:  |....:||||
  Rat   254 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLI-----MGGSNRSAEVQK--LLNGINIVVA 311

  Fly   142 TPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSATLT---D 203
            ||..||.:.:.......|:::.||:||||.:...|:|::.|::||.||...|.:|.|||.|   :
  Rat   312 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTRKVE 376

  Fly   204 DVVRMKGLCLNNPVTLKLE--------EPELVPQDQLSHQRILAEENDKPAILYALLKLRLIRGK 260
            |:.|         ::||.|        :.|:...|.|....::.....:..:|:..|| :..:.|
  Rat   377 DLAR---------ISLKKEPLYV
GVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLK-KNRKKK 431

  Fly   261 SIIFVNSIDRCYKVRL---FLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHMEK 322
            .::|.:|   |..|:.   .|....:....::.:...|.|..|..||......|::.:|      
  Rat   432 VMVFFSS---CMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTD------ 487

  Fly   323 PGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARG-NNKGSVLSF 386
                               .|:||:|...|:.::.:|.|.|...||||.|||||| |.:|..|..
  Rat   488 -------------------VAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLI 533

  Fly   387 VS---------MKESKVN----DSVEKKLCDSFAAQEGEQIIKNYQFKMEEVESFR--YRAQDCW 436
            :.         :|:|||.    |....|:.| ..:|..:.|.|||.......|:::  .||.|..
  Rat   534 LRPEELGFLRYLKQSKVPLNQFDFSWSKVSD-IQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSH 597

  Fly   437 RAATRVAVHDTRIREIKIEILNCEKLKAFFEENKRDLQALRHD-----------------KPLRA 484
            .......|::..:.::.:..  ..|:..|.     ||....||                 |.:..
  Rat   598 SLKQIFNVNNLNLPQVALSF--GFKVPPFV-----DLNVSSHDGKLKKRGGGGGFGYQKTKKVEK 655

  Fly   485 IKVQSHLSDMP 495
            .|:..|:|..|
  Rat   656 SKIFKHISKKP 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 67/210 (32%)
DEXDc 24..231 CDD:214692 68/221 (31%)
HELICc 234..386 CDD:238034 37/155 (24%)
Ddx18NP_001006997.1 DEADc 183..390 CDD:238167 70/216 (32%)
DEXDc 198..386 CDD:214692 66/204 (32%)
HELICc 404..533 CDD:238034 38/157 (24%)
DUF4217 565..623 CDD:290667 11/59 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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