DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hlc and Ddx56

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:XP_006251499.1 Gene:Ddx56 / 289780 RGDID:1303195 Length:546 Species:Rattus norvegicus


Alignment Length:563 Identity:263/563 - (46%)
Similarity:364/563 - (64%) Gaps:39/563 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 QKTVQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
            |:.:.|..:.||.|:|:||..|||.:|||||..||||.|||||::.||||||||||.||:|::|.
  Rat     4 QEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68

  Fly    71 ILNSKLN--ASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALS 133
            :|:.|..  ..||.|..:||.|||||.||::.:|:||...|.:.||||::: ::.|:.:||..|.
  Rat    69 LLHKKATGPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCARDVRVANVS-AAEDSASQRAVLM 132

  Fly   134 ESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVS 198
            |.||:||.||:.:|.:.:..::.....:|.||||||||:|::|:|.:.|.|:.|||.||||.|:|
  Rat   133 EKPDVVVGTPSRILNHLQQKNLKLRDSLELLVVDEADLLFSFGFEDELKSLLCHLPRIYQAFLMS 197

  Fly   199 ATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAE-ENDKPAILYALLKLRLIRGKSI 262
            ||..:||..:|.|.|:|||||||:|.:|...|||...:::.| |.||..:|||||||.|||||::
  Rat   198 ATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKAL 262

  Fly   263 IFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHM--EKPGG 325
            :|||:::|.|::|||||||.|.:||||.|||...|.|.|||||:|.||.:||:|...:  :....
  Rat   263 LFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHIISQFNQGLYDCVIATDAEILGPQVKAK 327

  Fly   326 KSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMK 390
            :.....|..::.|.||..:|||||..|:.|:|||.|....:|:||||||||.||.|.||:||...
  Rat   328 RQGRGSKGDKASDPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPT 392

  Fly   391 ESKVNDSVEKKLCDSFAAQEGE-QIIKNYQFKMEEVESFRYRAQDCWRAATRVAVHDTRIREIKI 454
            |......:|:.|     :.||: .|:..|||:|||:||||||.:|..|:.|:.|:.:.|::|||.
  Rat   393 EQSSLGKIEELL-----SGEGQAPILLPYQFQMEEIESFRYRCRDAMRSVTKQAIREARLKEIKE 452

  Fly   455 EILNCEKLKAFFEENKRDLQALRHDKPLRAIKVQSHLSDMPEYIVPKALKRVVGTSSSPVGASEA 519
            |:|:.||||.:||:|.||||.||||.||....|:.||.::|:|:||.||:.:|            
  Rat   453 ELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPAALRGLV------------ 505

  Fly   520 KQPRQSAAKAAFER-----QVNDPLMASQVDFGKRRPAHRRKK 557
             .||:...|..|.|     :..:||.    ||     .||.||
  Rat   506 -HPRKKRRKMPFSRKAKKVKTQNPLR----DF-----KHRGKK 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 106/210 (50%)
DEXDc 24..231 CDD:214692 105/208 (50%)
HELICc 234..386 CDD:238034 78/154 (51%)
Ddx56XP_006251499.1 SrmB 9..521 CDD:223587 254/530 (48%)
P-loop_NTPase 9..219 CDD:304359 106/210 (50%)
HELICc 234..388 CDD:238034 78/153 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353714
Domainoid 1 1.000 169 1.000 Domainoid score I3713
eggNOG 1 0.900 - - E2759_KOG0346
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6498
Inparanoid 1 1.050 473 1.000 Inparanoid score I1446
OMA 1 1.010 - - QHG53986
OrthoDB 1 1.010 - - D209533at33208
OrthoFinder 1 1.000 - - FOG0004019
OrthoInspector 1 1.000 - - oto98314
orthoMCL 1 0.900 - - OOG6_102730
Panther 1 1.100 - - LDO PTHR24031
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2772
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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