DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hlc and SPCC1494.06c

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_588531.1 Gene:SPCC1494.06c / 2538776 PomBaseID:SPCC1494.06c Length:595 Species:Schizosaccharomyces pombe


Alignment Length:599 Identity:223/599 - (37%)
Similarity:345/599 - (57%) Gaps:82/599 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QMTQKTVQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPL 67
            :.::||  |.:..||.|:.:|:.:..:::||.:||..|||.|||||:|.:|||||||||.|.:|:
pombe    10 ESSEKT--FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPI 72

  Fly    68 IQKILNSK-LNASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHA 131
            ::.:|..| ::.:::.:.|::|.||:||.:|...|:|:|...|.|.:|..::|.:|:||| ||..
pombe    73 LELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTV-QRPL 136

  Fly   132 LSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVL 196
            |.:.||||:|||:..:.:..:| |:.|..::.||:|||||:.::||.:|.|.|.:.||...|:.|
pombe   137 LLDLPDIVIATPSRCVVHVASG-VLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFL 200

  Fly   197 VSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAILYALLKLRLIRGKS 261
            :||||:.::..::.|...||..|.:::.|  ...:|:...:...|.||..:.|.|||||||:||.
pombe   201 MSATLSKNIASLQKLVCRNPFILAVKDKE--ASGKLTQYVVKCSEQDKFLLAYILLKLRLIKGKI 263

  Fly   262 IIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHM------ 320
            :||||.|:|||:::|||||||:::.|||||||.|.|:|.:.|:|||.|.||||:||..|      
pombe   264 LIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMMGEIEE 328

  Fly   321 ---------------EKP--------------------GGKSATNRKSPRSGDMESSASRGIDFQ 350
                           ::|                    ..|..:.:|.....|.|...:||:||:
pombe   329 LENNVDFVEEEVISTDQPTLDKMKDQENADVNDESILAAAKDKSKKKKRVKQDKEYGVARGLDFE 393

  Fly   351 CVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFV------------SMKESKVNDSVEKKLC 403
            .|..|:|||.|.:..|||||.|||||....|:.:|||            |::..|.::||.::| 
pombe   394 NVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKSEVGKHKPTSLESCKKDESVLRRL- 457

  Fly   404 DSFAAQEGEQI-IKNYQFKMEEVESFRYRAQDCWRAATRVAVHDTRIREIKIEILNCEKLKAFFE 467
                  |.:|| ::.|.|...::::||||.:|..||.|.|||...|..|:|.|:|..||||::|.
pombe   458 ------EKKQISLQPYSFDKNQIDAFRYRMEDALRAVTTVAVSAARAAELKQELLISEKLKSYFA 516

  Fly   468 ENKRDLQALRHD--KPLRAIKVQSHLSDMPEYIVPKALKRVVGTSSSPVGASEAKQPRQSAAKAA 530
            ||..:|.:|.||  ..:|....|.||..:|||::||.::.|    :..:|....|:..:   :..
pombe   517 ENPDELLSLTHDTVSSVRLGHTQRHLRHVPEYLLPKGMQAV----NKDIGFVPFKKNNR---RKV 574

  Fly   531 FERQVN-----DPL 539
            |:.:.|     |||
pombe   575 FKSRKNPKHRHDPL 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 85/209 (41%)
DEXDc 24..231 CDD:214692 82/207 (40%)
HELICc 234..386 CDD:238034 76/192 (40%)
SPCC1494.06cNP_588531.1 PTZ00424 15..445 CDD:185609 169/435 (39%)
P-loop_NTPase 16..220 CDD:304359 83/205 (40%)
HELICc 233..429 CDD:238034 77/195 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 144 1.000 Domainoid score I1158
eggNOG 1 0.900 - - E2759_KOG0346
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6498
Inparanoid 1 1.050 366 1.000 Inparanoid score I448
OMA 1 1.010 - - QHG53986
OrthoFinder 1 1.000 - - FOG0004019
OrthoInspector 1 1.000 - - oto101888
orthoMCL 1 0.900 - - OOG6_102730
Panther 1 1.100 - - LDO PTHR24031
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R293
SonicParanoid 1 1.000 - - X2772
TreeFam 1 0.960 - -
1413.860

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