DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hlc and rde-12

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_001256533.1 Gene:rde-12 / 179855 WormBaseID:WBGene00010280 Length:959 Species:Caenorhabditis elegans


Alignment Length:457 Identity:119/457 - (26%)
Similarity:195/457 - (42%) Gaps:99/457 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KTVQFHELELDQR------------ILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGK 59
            :.|:....|.|.|            ||:.:.::.:.....||...||.:|:|.||:.:|.|.:||
 Worm   366 RAVEIRNAEKDVRLTSWTNSGLHPTILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGK 430

  Fly    60 TATYALPLIQKIL---NSKLNASEQYVS--AVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIA 119
            ||.:.||:|.|||   ....|.:.|...  |::||||:||..|   :.|.|...|.....:..::
 Worm   431 TAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQ---IHEALRTYCQNTDIIVLLS 492

  Fly   120 DSSNDTVTQRHALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKR- 183
            ...:|.....:.:....||::.|...::.:. ..|.:.|.|:..||.||||.:.     :|.|: 
 Worm   493 YGQSDRARSLNEIRNGCDILIGTCGRIMDFT-VKSHISLLHLRFLVFDEADRLL-----QDMKKD 551

  Fly   184 LIKHLPPIY------------QAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQR 236
            .:.||..|.            |.::.|||....|     :.:.|.:..:|...:.:.:..|::.|
 Worm   552 PLGHLGAIIKDAGFMESAATRQTIMTSATFNASV-----MTVANELMKRLPGQDEMIKIVLANGR 611

  Fly   237 I-------------LAEENDKPAILYALLKLRLIRG---KSIIFVNSIDRCYKVRLFLEQFGIRA 285
            :             |||:|.|   |..:|| :.:.|   |:||||...|:|......|...|:.|
 Worm   612 LSKRVNLEFFECKGLAEKNAK---LREILK-QNVNGKTLKTIIFVQKKDQCDACAAKLTSGGMLA 672

  Fly   286 CVLNSELPANIRIHTISQFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQ 350
            ..|:.:...::|...|:.|.....::::.:|                         ..|||||..
 Worm   673 QTLHGDRSQDMREKLINDFKSNRVNLLVTTD-------------------------LLSRGIDVS 712

  Fly   351 CVNNVINFDFP-----RDVTSYIHRAGRTARGNNK--GSVLSFVSMKESKVNDS-VEKKLCDSFA 407
            .::.|||||.|     :...::|||||||.|...|  |..:|||..:..:  || :..||.:...
 Worm   713 DLDRVINFDLPDGDPDQGADTFIHRAGRTGRTGRKENGLCVSFVDPQSDR--DSLLAPKLVELII 775

  Fly   408 AQ 409
            :|
 Worm   776 SQ 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 62/238 (26%)
DEXDc 24..231 CDD:214692 58/224 (26%)
HELICc 234..386 CDD:238034 46/174 (26%)
rde-12NP_001256533.1 PTZ00110 230..799 CDD:240273 119/457 (26%)
P-loop_NTPase 382..594 CDD:304359 59/225 (26%)
HELICc 628..755 CDD:238034 43/155 (28%)
Nucleoporin_FG <867..950 CDD:290362
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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