DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hlc and ddx31

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:XP_031746553.1 Gene:ddx31 / 100492953 XenbaseID:XB-GENE-5831374 Length:704 Species:Xenopus tropicalis


Alignment Length:624 Identity:156/624 - (25%)
Similarity:248/624 - (39%) Gaps:138/624 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSQMTQKTV---QFHELELDQRILKAV-AQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTA 61
            :.|:.:|..   .|.:|.|...::..: ..:.....|.:|...||.||.|:||:||::||||||.
 Frog   121 VKQLKEKVFSADSFSDLGLHPHLVSTINTVMNMTNTTSVQKQTIPALLAGRDVLVRSQTGSGKTM 185

  Fly    62 TYALPLIQKI--LNSKLNASE-QYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSN 123
            .|.:||:|.:  :..|:..|: .|  |:||.||:||..||...|::|::....:  |..:.....
 Frog   186 AYGVPLVQSLQGVTPKIQRSDGPY--ALVLVPTRELALQSFSTIQKLLKPFTWI--VPGVLMGGE 246

  Fly   124 DTVTQRHALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHL 188
            ...:::..|.:..:|:::||..||.:..:...:.......|||||||.:...|:|||...::..|
 Frog   247 KRKSEKARLRKGINILISTPGRLLDHIRSTKSIHFTRARWLVVDEADRILDMGFEKDVTAILNAL 311

  Fly   189 P---PIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEE-----------PELVPQDQLSHQRILA 239
            .   ...|.||:||||:..|.|:..:.||:||::.:.|           |:...:|..|....:.
 Frog   312 NSQCQHRQNVLLSATLSPGVARLADISLNDPVSVTIAEDTNREDKHGGKPKEDKKDGDSSCFAMP 376

  Fly   240 EENDKPAILYALLKLRLI--------------RGKSIIFVNSIDRCYKVRLF------LEQFGIR 284
            |:..:.|:: |..||:|:              :.|.|:|..|   |..|..:      :...|..
 Frog   377 EKLHQHAVV-APSKLKLVTLAAFILGKWKCAKKPKMIVFFPS---CELVEFYHSLLSKVLTMGDS 437

  Fly   285 A------CVLNSELPANIRIHTISQFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSA 343
            |      ..|:..:....|.....||......|::.:|                         .|
 Frog   438 AMGPDDFLRLHGNMEQEERTEVFQQFTHCQAGILLCTD-------------------------VA 477

  Fly   344 SRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSF----------------VSMKES 392
            :||:|...|..::.|..|.....||||.|||||...:||.|..                :|:.|.
 Frog   478 ARGLDLPQVTWIVQFSAPASAAEYIHRVGRTARLGAQGSSLLILIPSEAAYLQTLAEHKISVSEM 542

  Fly   393 KVNDSVEKKLCDSFAAQEGEQIIKNYQFKMEEVESFRYRAQDCWRAATRVAVHDTRIREIKIEIL 457
            |:.|.:...|.:.|             .|:......:..|.|......|..|..|:         
 Frog   543 KMEDILSNLLMEDF-------------LKIRRAGGKKSEAADPQTVRERATVLQTK--------- 585

  Fly   458 NCEKLKAFFEENKRDLQALRHDKPLRAIK-VQSHLSDMPEYIVPKALKRVVGTSSSPVGASEAKQ 521
                    ||    |......|..|||.| :||::.....|  ||.||.:....|..:| ..||.
 Frog   586 --------FE----DYVHASADTALRAKKALQSYIRSYATY--PKNLKHIFHIRSLHLG-HVAKS 635

  Fly   522 PRQSAAKAAFERQV-NDPLMASQVDFGKRRPAHRRKKKA 559
            .....|..:..||: ..|...|:   ||.:.|...||::
 Frog   636 FGLRDAPHSLSRQLAGSPSKQSK---GKPKRADTHKKRS 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 70/215 (33%)
DEXDc 24..231 CDD:214692 69/224 (31%)
HELICc 234..386 CDD:238034 39/177 (22%)
ddx31XP_031746553.1 Dob10 22..>185 CDD:226947 21/63 (33%)
SrmB 130..616 CDD:223587 136/554 (25%)
DEADc_DDX31 143..346 CDD:350707 67/206 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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