DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hlc and ddx56

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_001120553.1 Gene:ddx56 / 100145707 XenbaseID:XB-GENE-941616 Length:552 Species:Xenopus tropicalis


Alignment Length:554 Identity:270/554 - (48%)
Similarity:366/554 - (66%) Gaps:21/554 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILN 73
            :|||||.||.|:||::|.|||.:|||||..||||.|||||::.||||||||||.|::|:||.:|.
 Frog     4 LQFHELGLDDRLLKSIADLGWAKPTLIQEKAIPLALEGKDLLARARTGSGKTAAYSIPIIQNLLQ 68

  Fly    74 SKLNASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALSESPDI 138
            :|:..|||.:..::|.|||||.:|.:::|.||...|.:.::||||:..: |...||..|.|.|||
 Frog    69 AKMTVSEQAIRVLILVPTKELGQQVQQMIRQLTVYCARDIKVADISGQA-DISAQRPILMEKPDI 132

  Fly   139 VVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSATLTD 203
            ||.||:.:|.:....::.....::.||:|||||||::|:|:|.|.|:..||.|:|:.|:|||.::
 Frog   133 VVGTPSRVLTHMTQQTICVRDTLQALVIDEADLVFSFGFEEDLKNLLCQLPKIFQSFLMSATFSE 197

  Fly   204 DVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAILYALLKLRLIRGKSIIFVNSI 268
            ||..:|.|.|:|||||||||.:.....||:...|..||.||..:||.||||.|||||:|||||.:
 Frog   198 DVQALKELVLHNPVTLKLEESQFPDSSQLTQFHIQCEEEDKFLLLYTLLKLSLIRGKTIIFVNEV 262

  Fly   269 DRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHMEKPG--GKSATNR 331
            ||.|:::||||||.|.|||||||||.:.|.|.|||||:|.||.|||:|||.:..|.  |:....:
 Frog   263 DRSYRLKLFLEQFSIPACVLNSELPIHSRCHIISQFNQGFYDYIIATDEHSLADPSVKGRRGEGK 327

  Fly   332 KSPRSG----DMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKES 392
            |....|    |.|...|||||||.|:.|:|||||:.|.|||||||||||.||.|..|:||:..|.
 Frog   328 KKGGKGQKGQDKEYGVSRGIDFQNVSTVLNFDFPQSVDSYIHRAGRTARANNPGVALTFVAHTEL 392

  Fly   393 KVNDSVEKKLCDSFAAQEGEQIIKNYQFKMEEVESFRYRAQDCWRAATRVAVHDTRIREIKIEIL 457
            .:...||:.|   ......|.::|.|:|.|||||.||||.:|..|:.|:.|:.:.|::|||.|:|
 Frog   393 PLLSEVEEAL---GGGVPDEHVLKPYRFCMEEVEGFRYRCRDAMRSVTKQAIKEARLKEIKEELL 454

  Fly   458 NCEKLKAFFEENKRDLQALRHDKPLRAIKVQSHLSDMPEYIVPKALKRVVGTSSSPVGASEAKQP 522
            |.||||.:||:|.||.|.|||||||....|:.||.::|||::|.||:.|     :.:...:.|:.
 Frog   455 NSEKLKTYFEDNPRDFQLLRHDKPLHPAIVKPHLKNVPEYLIPPALRAV-----ADIHNRKRKRR 514

  Fly   523 RQSAAKAAFE------RQVNDPLMASQVDFGKRR 550
            :..|....|:      ::..:||.:.:....|||
 Frog   515 KLKAGNLGFQGTRSKFQRGQNPLRSFKYAKSKRR 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 105/208 (50%)
DEXDc 24..231 CDD:214692 101/206 (49%)
HELICc 234..386 CDD:238034 92/157 (59%)
ddx56NP_001120553.1 PRK11192 5..469 CDD:236877 242/467 (52%)
P-loop_NTPase 6..214 CDD:304359 105/208 (50%)
Helicase_C 251..378 CDD:278689 76/126 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 168 1.000 Domainoid score I3783
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6498
Inparanoid 1 1.050 506 1.000 Inparanoid score I1303
OMA 1 1.010 - - QHG53986
OrthoDB 1 1.010 - - D209533at33208
OrthoFinder 1 1.000 - - FOG0004019
OrthoInspector 1 1.000 - - oto105007
Panther 1 1.100 - - LDO PTHR24031
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2772
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.080

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