DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hlc and ddx55

DIOPT Version :9

Sequence 1:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_001120242.1 Gene:ddx55 / 100145293 XenbaseID:XB-GENE-972462 Length:594 Species:Xenopus tropicalis


Alignment Length:619 Identity:142/619 - (22%)
Similarity:247/619 - (39%) Gaps:149/619 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSQMTQKTVQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYAL 65
            |..:|:.|......:|:..|.:.:::|.:...|.:||..|||.:..||:...|.||||||..:.:
 Frog     1 MENVTEGTWDSLSHKLNSSIRQTLSELKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKTLAFVI 65

  Fly    66 PLIQKILNSKLNASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSS--NDTVTQ 128
            ||::.:|..:....:..|.|:::.||:||..|..:|:....:...:..::..|..|:  :|.:..
 Frog    66 PLLEILLKREEKLKKNQVGAIIITPTRELAVQIDEVLSYFTKHFPQFSQILLIGGSNPVDDVMKF 130

  Fly   129 RHALSESPDIVVATPANLL-AYAEAGSVVDL----KHVETLVVDEADLVFAYGYEKDFKRLIKHL 188
            :   ....:|:||||..|. .:......:||    |.::.|::||||.:...|:|.....::..|
 Frog   131 K---EHGGNIIVATPGRLEDMFRRQADGLDLVSYVKTLDVLILDEADRLLDMGFEASINTILGFL 192

  Fly   189 PPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELV------PQDQLSHQRILAEENDKPAI 247
            |...:..|.|||.|.::..:....|.|||.:.::|..:.      ...:|.:..::.:.::|...
 Frog   193 PKQRRTGLFSATQTQELENLVRAGLRNPVRIAVKEKGVAATCTQKTPIRLQNYYMICKADEKFNK 257

  Fly   248 LYALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACV--LNSELPA---NIRIHTI------ 301
            |.|.|:.|. :.|.::|                |...|||  ....|.|   |:::..|      
 Frog   258 LVAFLQQRK-QEKHLVF----------------FSTCACVEYYGKALEALLKNVKVMCIHGKMKH 305

  Fly   302 ------SQFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDF 360
                  ::|.|....|::.:|                         ..:||||...||.|:.:|.
 Frog   306 KRNRIFTEFRKLNSGILVCTD-------------------------VMARGIDIPEVNWVVQYDP 345

  Fly   361 PRDVTSYIHRAGRTARGNNKGSVLSF-VSMKESKVND-SVEKKLCDSFAAQEGEQIIKNYQFKME 423
            |...::::||.|||||..:.||.|.| :.|:||.|:. |:.:| |   ..||..::|.       
 Frog   346 PSSASAFVHRCGRTARIGHHGSALVFLLPMEESYVSFLSINQK-C---PLQEMTELIS------- 399

  Fly   424 EVESFRYRAQDCWRAATRVAVHDTRIREIKIEILNCEKLKAF----------------------F 466
                    |.|.......:|..|..:.|        :.:|||                      |
 Frog   400 --------AVDLLPKLKSMAESDRAVFE--------KGMKAFVSYVQAYAKHECNLIFRVKDLDF 448

  Fly   467 EENKRDLQALRHDK--PLRAIKVQSHLSDMPEYIVPKALKRVVGTSSSPVGASEAKQPRQSAAKA 529
            ....|....||..:  .||.    .:.||.        :...:.|.|.|......::.||...|.
 Frog   449 SNLARGFGLLRMPRMPELRG----KNFSDF--------VSTTIDTDSIPYKDKNREKQRQKMLKE 501

  Fly   530 AFERQVNDPLMASQVDFGK-----RRPAHRRKKK 558
            ..|:..::    .:.:|.|     ::.|.:.|||
 Frog   502 RREKLESE----GRRNFAKNKAWSKQKARKDKKK 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 59/215 (27%)
DEXDc 24..231 CDD:214692 58/219 (26%)
HELICc 234..386 CDD:238034 38/168 (23%)
ddx55NP_001120242.1 SrmB 5..519 CDD:223587 137/601 (23%)
DEADc 9..224 CDD:238167 59/217 (27%)
HELICc 252..371 CDD:238034 38/160 (24%)
DUF4217 403..462 CDD:290667 10/66 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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