DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dd and Ctdspl2

DIOPT Version :10

Sequence 1:NP_608449.1 Gene:Dd / 33107 FlyBaseID:FBgn0029067 Length:243 Species:Drosophila melanogaster
Sequence 2:NP_001014070.3 Gene:Ctdspl2 / 311368 RGDID:1309219 Length:465 Species:Rattus norvegicus


Alignment Length:217 Identity:78/217 - (35%)
Similarity:113/217 - (52%) Gaps:22/217 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 FIQYQPVKYELFPLSPVSRHR---LSLVQRKT----LVLDLDETLIHSHHNAMPRNTVKPGTPHD 91
            ||::.|      ||:....:|   |.|..|.|    |||||||||:|...|.:....:       
  Rat   259 FIKHVP------PLTEEQLNRKPALPLKTRSTPEFSLVLDLDETLVHCSLNELEDAAL------- 310

  Fly    92 FTVKVTIDRNPVRFFVHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNILRRRYY 156
             |..|.......:.:|..||....||:.:||.|::::||||.::|...:.:.||..:.::|.|.:
  Rat   311 -TFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLF 374

  Fly   157 RQHCTPDYGSYTKDLSAICSDLNRIFIIDNSPGAYRCFPNNAIPIKSWFSDPMDTALLSLLPMLD 221
            |:||....|:|.|||:.:..||::..||||||.|:....:|.|||:|||.|..|..||.|:|.|:
  Rat   375 REHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLE 439

  Fly   222 AL-RFTNDVRSVLSRNLHLHRL 242
            .| ....|||..:.....||.|
  Rat   440 KLVELNEDVRPHIRDRFRLHDL 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DdNP_608449.1 HIF-SF_euk 60..228 CDD:274055 64/172 (37%)
Ctdspl2NP_001014070.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..133
HIF-SF_euk 286..447 CDD:274055 62/168 (37%)
Blue background indicates that the domain is not in the aligned region.

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