DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt6 and PSMC4

DIOPT Version :9

Sequence 1:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_006494.1 Gene:PSMC4 / 5704 HGNCID:9551 Length:418 Species:Homo sapiens


Alignment Length:416 Identity:168/416 - (40%)
Similarity:247/416 - (59%) Gaps:47/416 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 IEELQLVVAEKHQNLRRLQAQR---------------NELNAKVRMLREELQLLQEQGSYVGEVV 76
            :||:.::|.:....:..|...|               .:|.::.:.|::||:.|:.|..|:.:..
Human     1 MEEIGILVEKAQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQ 65

  Fly    77 KPMDKKKVLVKVHPE-----------GKFVVDLDKN-------------------IDINDVTPNC 111
            |.:  ||..:....|           |:|:..:|:|                   ||...:.||.
Human    66 KNL--KKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNA 128

  Fly   112 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDA 176
            .|||...|..|..:||.:.|..:.::..::.||..|..:||:|.|.:|::|.:|||:.|.||:..
Human   129 SVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQ 193

  Fly   177 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHA 241
            :||..|:|||:|||||.|||:||:||||||...||||.|||.|||::|||.||||::|.:|:|:|
Human   194 IGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 258

  Fly   242 PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLR 306
            |:|||:||||:|.:.|.::.:|.|.||||.:||||||:|||:...|:||||||||.|.|||||||
Human   259 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLR 323

  Fly   307 PGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR 371
            |||:|||||||.|:...:..|....:.||||:..::|..........|||::..:|.|:||.|:|
Human   324 PGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVR 388

  Fly   372 ERRVHVTQEDFEMAVAKVMQKDSEKN 397
            |.|..|..:|||.|...|::||.:::
Human   389 ENRYIVLAKDFEKAYKTVIKKDEQEH 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6NP_608447.1 RPT1 17..403 CDD:224143 168/416 (40%)
SlyX <27..>69 CDD:294687 10/56 (18%)
AAA_16 152..>205 CDD:289934 30/52 (58%)
AAA 185..317 CDD:278434 89/131 (68%)
PSMC4NP_006494.1 PTZ00454 34..418 CDD:240423 163/383 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.