DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6 and psmc5

DIOPT Version :9

Sequence 1:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_001003740.1 Gene:psmc5 / 445285 ZFINID:ZDB-GENE-030131-6547 Length:406 Species:Danio rerio


Alignment Length:400 Identity:373/400 - (93%)
Similarity:386/400 - (96%) Gaps:1/400 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RMEIESAYHKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGS 70
            :|:||.: ..|.|.|.||:.|||||||.|.||.||||||||||||||||||:|||||||||||||
Zfish     8 QMDIEDS-KGGSGLRQYYLSKIEELQLTVNEKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGS 71

  Fly    71 YVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVS 135
            ||||||:.|||||||||||||||||||:|||||||||||||||||||:|||||||||||||||||
Zfish    72 YVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 136

  Fly   136 LMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 200
            ||||||||||||||:||||||||||||||||||||||||:|||||||||||||||||||||||||
Zfish   137 LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLAR 201

  Fly   201 AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGD 265
            ||||||:|||||||||||||||||||:||||||||||||||||||||||||||||||:|.|||||
Zfish   202 AVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 266

  Fly   266 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKI 330
            ||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Zfish   267 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKI 331

  Fly   331 HSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 395
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Zfish   332 HSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 396

  Fly   396 KNMSIKKLWK 405
            ||||||||||
Zfish   397 KNMSIKKLWK 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6NP_608447.1 RPT1 17..403 CDD:224143 365/385 (95%)
SlyX <27..>69 CDD:294687 37/41 (90%)
AAA_16 152..>205 CDD:289934 51/52 (98%)
AAA 185..317 CDD:278434 126/131 (96%)
psmc5NP_001003740.1 RPT1 4..404 CDD:224143 369/396 (93%)
AAA_16 153..>206 CDD:289934 51/52 (98%)
AAA 186..318 CDD:278434 126/131 (96%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 254 1.000 Domainoid score I2022
eggNOG 1 0.900 - - E1_COG0554
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2098
Inparanoid 1 1.050 732 1.000 Inparanoid score I596
OMA 1 1.010 - - QHG53670
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 1 1.000 - - FOG0003106
OrthoInspector 1 1.000 - - oto41635
orthoMCL 1 0.900 - - OOG6_101513
Panther 1 1.100 - - LDO PTHR23073
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1002
SonicParanoid 1 1.000 - - X2077
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.870

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