DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6 and psmc1a

DIOPT Version :9

Sequence 1:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_956327.1 Gene:psmc1a / 336786 ZFINID:ZDB-GENE-030131-8730 Length:440 Species:Danio rerio


Alignment Length:383 Identity:178/383 - (46%)
Similarity:256/383 - (66%) Gaps:16/383 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 KGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGS--YVGEVVK 77
            |.|..:.|.:.:.|.::     ..:.::.|:.::.|..:||..||         |:  .||.:.:
Zfish    64 KQERIKDYLLMEEEFIR-----DQEQMKPLEEKQEEERSKVDDLR---------GTPMSVGTLEE 114

  Fly    78 PMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 142
            .:|....:|......:..|.:...:|.:.:.|.|.|.|.::.:.:..:|.:..||||::|.|||.
Zfish   115 IIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKA 179

  Fly   143 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 207
            |..||..:||||.||:||||.:|||:.|||.::.:||..||||:|||.|||||||||:|||:.|.
Zfish   180 PQETYADIGGLDSQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 244

  Fly   208 CTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 272
            .||:||.||||:||::|:|.::|||||.:|.||||||:|:||||:||:.|.:|.|||:.|:||||
Zfish   245 ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309

  Fly   273 LELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL 337
            ||||||||||::..::|||||||||:.|||||:||||||||||||.|:|:.:..|.:||:.:|.:
Zfish   310 LELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTV 374

  Fly   338 TRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 395
            ...:.|..:.......|||::|.:|||||:.||||||:.||.|||:.:...|:.|..|
Zfish   375 ADDVTLDDLILAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6NP_608447.1 RPT1 17..403 CDD:224143 177/381 (46%)
SlyX <27..>69 CDD:294687 7/41 (17%)
AAA_16 152..>205 CDD:289934 36/52 (69%)
AAA 185..317 CDD:278434 92/131 (70%)
psmc1aNP_956327.1 PTZ00361 25..440 CDD:185575 178/383 (46%)
Prot_ATP_ID_OB 108..>176 CDD:293059 16/67 (24%)
AAA 222..355 CDD:278434 93/132 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0554
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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