Protein Alignment Rpt6 and psmc1a

DIOPT Version :10

• Sequence 1: NP_608447.1
• Gene: Rpt6 / 33105
• FlyBaseID: FBgn0020369
• Length: 405
• Species: Drosophila melanogaster
• Sequence 2: NP_956327.1
• Gene: psmc1a / 336786
• ZFINID: ZDB-GENE-030131-8730
• Length: 440
• Species: Danio rerio
• Alignment Length: 383
• Identity: 178/383 - (46%)
• Similarity: 256/383 - (66%)
• Gaps: 16/383 - (4%)

  Fly    15 KGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGS--YVGEVVK 77
            |.|..:.|.:.:.|.::     ..:.::.|:.::.|..:||..||         |:  .||.:.:
Zfish    64 KQERIKDYLLMEEEFIR-----DQEQMKPLEEKQEEERSKVDDLR---------GTPMSVGTLEE 114

  Fly    78 PMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 142
            .:|....:|......:..|.:...:|.:.:.|.|.|.|.::.:.:..:|.:..||||::|.|||.
Zfish   115 IIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKA 179

  Fly   143 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 207
            |..||..:||||.||:||||.:|||:.|||.::.:||..||||:|||.|||||||||:|||:.|.
Zfish   180 PQETYADIGGLDSQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 244

  Fly   208 CTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 272
            .||:||.||||:||::|:|.::|||||.:|.||||||:|:||||:||:.|.:|.|||:.|:||||
Zfish   245 ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309

  Fly   273 LELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL 337
            ||||||||||::..::|||||||||:.|||||:||||||||||||.|:|:.:..|.:||:.:|.:
Zfish   310 LELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTV 374

  Fly   338 TRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 395
            ...:.|..:.......|||::|.:|||||:.||||||:.||.|||:.:...|:.|..|
Zfish   375 ADDVTLDDLILAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt6	NP_608447.1	PRK03992	23..399	CDD:179699	175/375 (47%)
psmc1a	NP_956327.1	PTZ00361	25..440	CDD:185575	178/383 (46%)