DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt6 and psmc4

DIOPT Version :10

Sequence 1:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_956044.2 Gene:psmc4 / 326884 ZFINID:ZDB-GENE-030131-5083 Length:418 Species:Danio rerio


Alignment Length:396 Identity:167/396 - (42%)
Similarity:246/396 - (62%) Gaps:7/396 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IESAYHKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQR-----NELNAKVRML--REELQLLQ 66
            :.|....|..|.:...:.:|:|..:..:..|.|..|:.|.     .:.|.|...|  :||::.:|
Zfish    19 LNSRPQTGLSFLAPEPEDLEDLYSIYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQ 83

  Fly    67 EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVD 131
            .....:|:.::.:|:...:|.......:.|.:...||...:.||..|||...|..|..:||.:.|
Zfish    84 SIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 148

  Fly   132 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 196
            ..:.::..::.||..|..:||:|.|.:|::|.:|||:.|.||:..:||..|:|||:|||||.|||
Zfish   149 SSIMMLTSDQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKT 213

  Fly   197 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESG 261
            :||:||||||...||||.|||.|||::|||.||||::|.:|:|:||:|||:||||:|.:.|.::.
Zfish   214 MLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQ 278

  Fly   262 SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLD 326
            :|.|.||||.:||||||:|||:...|:||||||||.|.||||||||||:|||||||.|:...:..
Zfish   279 TGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 343

  Fly   327 ILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 391
            :....:.||||:..::|..........|||::..:|.||||.|:||.|..|..:|||.|...|::
Zfish   344 VFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQEAGMLAVRENRYIVLAKDFEKAYKTVIK 408

  Fly   392 KDSEKN 397
            ||.:::
Zfish   409 KDEQEH 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6NP_608447.1 PRK03992 23..399 CDD:179699 164/382 (43%)
psmc4NP_956044.2 PTZ00454 34..418 CDD:240423 164/381 (43%)

Return to query results.
Submit another query.