Protein Alignment Rpt6 and Atad2

DIOPT Version :10

• Sequence 1: NP_608447.1
• Gene: Rpt6 / 33105
• FlyBaseID: FBgn0020369
• Length: 405
• Species: Drosophila melanogaster
• Sequence 2: NP_001128351.1
• Gene: Atad2 / 314993
• RGDID: 1304849
• Length: 1373
• Species: Rattus norvegicus
• Alignment Length: 324
• Identity: 113/324 - (34%)
• Similarity: 172/324 - (53%)
• Gaps: 63/324 - (19%)

  Fly   116 RNESYTLHKILP----------------------NKVDPLVSLMMVEKVPDST--YEMVGGLDKQ 156
            ||.:..:::.||                      ..|||:..        ||:  ::.||||...
  Rat   363 RNRNRAINRCLPLNFRKDEIRGIYKDRMKIGANLADVDPMQL--------DSSVRFDSVGGLSSH 419

  Fly   157 IKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-------FIRVS 214
            |..:||::..|:.:||:|:...|..|:|.|.||||||||||:|||:|:  ||:       |....
  Rat   420 IAALKEMVLFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALAN--ECSRGDKRVAFFMRK 482

  Fly   215 GSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 279
            |::.:.|::||..|.:|.||..|.:..|:|||.||||.:...|........|.:..|:|.|   :
  Rat   483 GADCLSKWVGESERQLRLLFDQAYQMRPAIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLAL---M 544

  Fly   280 DGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN-- 342
            ||.::...|.||.||||:|.:||||.||||.||:..|..|:::||.:|||||:|..| .:.::
  Rat   545 DGLDSRGEIVVIGATNRLDSIDPALRRPGRFDREFLFSLPDKDARKEILKIHTRDWN-PKPVDMF 608

  Fly   343 LRKIAELMPGASGAEVKGVCTEAGMYALRER----------------RVHVTQEDFEMAVAKVM 390
            |.::||...|..||::|.:|.||.:.|||.|                .::::.:|||.|:.|::
  Rat   609 LEELAENCVGYCGADIKSICAEAALCALRRRYPQIYTTSEKLQLDLSSINISAKDFETAMQKII 672

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt6	NP_608447.1	PRK03992	23..399	CDD:179699	113/324 (35%)
Atad2	NP_001128351.1	RecA-like_Yta7-like	412..581	CDD:410925	74/173 (43%)
		AAA_lid_3	609..643	CDD:465537	14/33 (42%)
		ycf46	<778..919	CDD:177094
		Bromo_AAA	972..1082	CDD:99957