DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6 and Psmc5

DIOPT Version :10

Sequence 1:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_032976.1 Gene:Psmc5 / 19184 MGIID:105047 Length:406 Species:Mus musculus


Alignment Length:400 Identity:372/400 - (93%)
Similarity:386/400 - (96%) Gaps:1/400 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RMEIESAYHKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGS 70
            :||:|.. ..|.|.|.||:.|||||||:|.:|.||||||||||||||||||:|||||||||||||
Mouse     8 QMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGS 71

  Fly    71 YVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVS 135
            ||||||:.|||||||||||||||||||:|||||||||||||||||||:|||||||||||||||||
Mouse    72 YVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 136

  Fly   136 LMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 200
            ||||||||||||||:||||||||||||||||||||||||:|||||||||||||||||||||||||
Mouse   137 LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLAR 201

  Fly   201 AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGD 265
            ||||||:|||||||||||||||||||:||||||||||||||||||||||||||||||:|.|||||
Mouse   202 AVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 266

  Fly   266 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKI 330
            ||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Mouse   267 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKI 331

  Fly   331 HSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 395
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse   332 HSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 396

  Fly   396 KNMSIKKLWK 405
            ||||||||||
Mouse   397 KNMSIKKLWK 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6NP_608447.1 PRK03992 23..399 CDD:179699 357/375 (95%)
Psmc5NP_032976.1 PRK03992 24..400 CDD:179699 357/375 (95%)
May mediate interaction with PRPF9. /evidence=ECO:0000269|PubMed:17349974 186..406 214/219 (98%)

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