DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6 and Psmc2

DIOPT Version :9

Sequence 1:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_001355590.1 Gene:Psmc2 / 19181 MGIID:109555 Length:433 Species:Mus musculus


Alignment Length:388 Identity:190/388 - (48%)
Similarity:254/388 - (65%) Gaps:23/388 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 RSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNA-----------KVRMLREELQLLQ-EQGSYV 72
            :|.|.::|::::       .::::|..:.|||..           .:..|..:.|.|| ||...|
Mouse    38 QSTYSRQIKQVE-------DDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQV 95

  Fly    73 GEVVK----PMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPL 133
            ....|    ..:..|.::.|....||||||...:...|:....||.:....|.:|..||.|:||.
Mouse    96 ARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPT 160

  Fly   134 VSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 198
            |::|.||:.||.||..|||..:||::::||:|.|:.|||.|..|||..||||||:|||||||||.
Mouse   161 VTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLC 225

  Fly   199 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSG 263
            |||||:.|:..||||.|||||||::|||:|||||||.|||.....:||.||||:||.:|.:.|:|
Mouse   226 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG 290

  Fly   264 GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDIL 328
            ||:|||||||||:||||||:...||||:|||||.|.|||||:||||:||||||..|:.|.|..|.
Mouse   291 GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIF 355

  Fly   329 KIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 391
            |||:|.|::.|.|....:|.|.|.::|||::.|||||||:|:|.||...|::||..||.||::
Mouse   356 KIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6NP_608447.1 RPT1 17..403 CDD:224143 190/388 (49%)
SlyX <27..>69 CDD:294687 10/53 (19%)
AAA_16 152..>205 CDD:289934 34/52 (65%)
AAA 185..317 CDD:278434 94/131 (72%)
Psmc2NP_001355590.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
RPT1 23..430 CDD:224143 190/388 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0554
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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