DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6 and lex-1

DIOPT Version :9

Sequence 1:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_502289.2 Gene:lex-1 / 178146 WormBaseID:WBGene00008682 Length:1291 Species:Caenorhabditis elegans


Alignment Length:424 Identity:137/424 - (32%)
Similarity:206/424 - (48%) Gaps:67/424 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 RSYYIQKIEE-LQLVVAEKHQNLR-RLQAQR--NELNAKVRMLREELQLLQEQGSYVGEVVKPM- 79
            |.|.:::.:. :|...:|..:|.| ||:..|  |: |...|......:...:..|...::|.|. 
 Worm   263 RQYSLRRRQPVVQFNASEARENRRARLEHHRVANQ-NRHHRNRNGSRRRRSDSDSDSDDMVLPRP 326

  Fly    80 DKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNK------------VDP 132
            ||::....:|..|:  .:..:.:.||        ....|..:...||.::            :||
 Worm   327 DKRQSRPHMHNRGE--RERGRFMPIN--------MTEKELQSAQHILMDRMRKTDAGQGASDIDP 381

  Fly   133 LVSLMMVEKVPDST-YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 196
            :       .|..|. ::.||||...|:.:|||:..|:.:||:|:...|..||||:.|||||||||
 Worm   382 M-------SVDSSVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINPPKGVVFYGPPGTGKT 439

  Fly   197 LLARAVAHHTEC-------TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG 254
            |:|||:|:  ||       .|....|::.:.|::||..|.:|.||..|....|||||.||||.:.
 Worm   440 LVARALAN--ECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLA 502

  Fly   255 SSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 319
            ..|........:.:..|:|.|::.|||   ...:.||.||||:|.|||||.||||.||::.|..|
 Worm   503 PVRSSKQDQIHASIVSTLLALMDGLDG---RGEVVVIGATNRLDTLDPALRRPGRFDRELRFSLP 564

  Fly   320 NEEARLDILKIHSRKMNLTRGI--NLRKIAELMPGASGAEVKGVCTEAGMYALRERRVH------ 376
            :..||..||.||:.|....:.|  .|..|||...|..||::|.:||||.:..||.|..|      
 Worm   565 DLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCGADLKFLCTEAVLIGLRSRYPHIYMCSE 629

  Fly   377 ----------VTQEDFEMAVAKVMQKDSEKNMSI 400
                      :|.|.|..|:.::... |.::::|
 Worm   630 RLKLDVATIKITSEHFGHAMRRITPA-SRRDLTI 662

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6NP_608447.1 RPT1 17..403 CDD:224143 137/424 (32%)
SlyX <27..>69 CDD:294687 10/45 (22%)
AAA_16 152..>205 CDD:289934 29/52 (56%)
AAA 185..317 CDD:278434 61/138 (44%)
lex-1NP_502289.2 AAA 424..565 CDD:214640 65/145 (45%)
AAA 428..563 CDD:278434 62/139 (45%)
Bromo_AAA 916..1027 CDD:99957
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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