DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1801 and ABCA1

DIOPT Version :10

Sequence 1:NP_728408.3 Gene:CG1801 / 33104 FlyBaseID:FBgn0031171 Length:1655 Species:Drosophila melanogaster
Sequence 2:NP_850354.2 Gene:ABCA1 / 818768 AraportID:AT2G41700 Length:1882 Species:Arabidopsis thaliana


Alignment Length:2022 Identity:397/2022 - (19%)
Similarity:748/2022 - (36%) Gaps:566/2022 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FKRYIRIELNLWRRTLFEIVALVIMVLVIFLNPIAHSKRL---LYTTTENENEQSIV------SH 64
            ||..:|....|..|..|...|.:::..::.|..||...|:   ::....|.::.::|      |.
plant     8 FKAMLRKNWLLKTRHPFVTSAEILLPTIVMLLLIAVRTRVDTTIHPAHSNIDKDTVVEVGKGNSP 72

  Fly    65 KLQDI-NILTRMADSKREKTKYILAFTPETTFTSE--------------VTKNVAKTLELS---S 111
            ...:: .:|....|        .|||.|:|..|:.              |||.....:||.   :
plant    73 SFPEVLKLLLAEGD--------FLAFAPDTDETNNMIDILSLKFPELRLVTKIFKDDIELETYIT 129

  Fly   112 TVGYESESEMQNQFDERTTLAGIVFNDLRDDGTPLTLSISIR---------FP---SEFRTIAPF 164
            :..|...||::|..:.:.. ..:||:   :.| |.....|||         ||   |...|..|:
plant   130 SAHYGVCSEVRNCSNPKIK-GAVVFH---EQG-PHLFDYSIRLNHTWAFAGFPNVKSIMDTNGPY 189

  Fly   165 LTEDRLWITRCSGRINPGRDRAKHDKQQDIYIREGFLQLQHQI--FVEWYHQLRKDIVSTYPEPN 227
            :.:..:.|...     |...          |...|||.||..:  |:.:..|...|:..::...:
plant   190 INDLEMGINTI-----PTMQ----------YSFSGFLTLQQVVDSFIIFASQQNNDLPLSHSNLS 239

  Fly   228 VEVYNILLKAADEPCSVMSVAQLPTFLY-------------NFIYLLPFLNIIRNVAA------- 272
            ..:...|......| ||:.:...||..|             ..:|||.||..|..:.:       
plant   240 SALRFELPWTLFSP-SVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISRLISYSVFEKE 303

  Fly   273 -QVEDGVMVHQWHYGYSFGMQ-------WGIKFLVLF------LRMCILGVIY-----TIMLLAF 318
             ::.:|:        |..|::       |.|.:.:.|      :..|.:|.::     |::...|
plant   304 QKIREGL--------YMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKYSDKTLVFTYF 360

  Fly   319 WGFG--------------GREGEFSGTGTIAFV-CFITLYTVEIIITGMVVAKLFANPTNAVLFA 368
            :.||              .|.......||:.|: .|...|||......||: |:.|:..:...||
plant   361 FLFGLSAIMLSFMISTFFTRAKTAVAVGTLTFLGAFFPYYTVNDESVSMVL-KVVASLLSPTAFA 424

  Fly   369 L--------------MLWLFMYAAFCIILERYWDIHKYYVFFI--LVAFCNCQMHFSMSLFRNCI 417
            |              :.|           ...|.......||:  |:...:..::.::.|:    
plant   425 LGSINFADYERAHVGLRW-----------SNIWRASSGVSFFVCLLMMLLDSILYCALGLY---- 474

  Fly   418 EKPEMVNTIDFVLIFTSAISSALIYFLILLAIQWRMPGTFLSRRIVNNRPRKQQESDTTIMYLGR 482
                    :|.||...:.:               |.|..|:..:....:....|         .|
plant   475 --------LDKVLPRENGV---------------RYPWNFIFSKYFGRKKNNLQ---------NR 507

  Fly   483 APSFQNFEFG---------------------------DVGSVELMRLRHVSTSHRDSERKILKNI 520
            .|.|:...|.                           |...:::..|..|..|.|.:...: .::
plant   508 IPGFETDMFPADIEVNQGEPFDPVFESISLEMRQQELDGRCIQVRNLHKVYASRRGNCCAV-NSL 571

  Fly   521 SMRIYRGEVFVILGHIGSGKLTLLRILAGLKFPLRGNVYIMGNPFEPN-GEARRLV------DFR 578
            .:.:|..::..:|||.|:||.|.:.:|.||..|..|:..|:||....| .|.|:.:      |..
plant   572 QLTLYENQILSLLGHNGAGKSTTISMLVGLLPPTSGDALILGNSIITNMDEIRKELGVCPQHDIL 636

  Fly   579 FDEHGLNKHLTVEQTIDYHVRLKLSPSESDRYEIERRKWLAILDQHVESRGVR------IGKLSS 637
            |.|      |||.:.::....||         .:|.....:.:....|..|:.      :..||.
plant   637 FPE------LTVREHLEMFAVLK---------GVEEGSLKSTVVDMAEEVGLSDKINTLVRALSG 686

  Fly   638 GSMKLVALCCCLAGDTPIIILEEPTTQLTGREAQIFWSIVHAEKENRAFIIATYNVGEAEHVADR 702
            |..:.::|...|.|::.:|||:|||:.:.....::.|.::...|:.|..::.|:::.|||.:.||
plant   687 GMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDR 751

  Fly   703 IGILSMGVLEASGTPFFLRSKFSSSVDLVIIKKPHVPDQPITDYI-NQFMQNIEPENEIGDSLTY 766
            |||::.|.|:..|:..||:..:.....|.::|..  |...:..:| ::.:.:....:|:|:.:::
plant   752 IGIMANGSLKCCGSSIFLKHHYGVGYTLTLVKTS--PTVSVAAHIVHRHIPSATCVSEVGNEISF 814

  Fly   767 RLPVIYRPRLQKLLIHLE------IDRKML---------GIEN------------VRVVGAEL-- 802
            :||:...|..:.:...:|      :||..:         ||::            :||.|..|  
plant   815 KLPLASLPCFENMFREIESCMKNSVDRSKISEIEDSDYPGIQSYGISVTTLEEVFLRVAGCNLDI 879

  Fly   803 ----SDIYMTLVTSFRL------QQQ----------------MIPDVTQTFKYQV---------- 831
                .||:::..|...|      |:.                :|..|.:.|:..|          
plant   880 EDKQEDIFVSPDTKSSLVCIGSNQKSSMQPKLLASCNDGAGVIITSVAKAFRLIVAAVWTLIGFI 944

  Fly   832 --------VSQKQLTKQRMRAMFYKKMIHTAPN--------VWPIIMIFTSFVLIAI-------- 872
                    :..:.:..:..:|:|.|:......:        :.|.:.:....:.:.:        
plant   945 SIQCCGCSIISRSMFWRHCKALFIKRARSACRDRKTVAFQFIIPAVFLLFGLLFLQLKPHPDQKS 1009

  Fly   873 ----IARLSVLLD---------------MPKERQNSIHIGFREPEDVVKY-LPNLKDCGYIDIRS 917
                .|..:.||.               :.||....|..|:.:|.....| .||.|:.....|.:
plant  1010 ITLTTAYFNPLLSGKGGGGPIPFDLSVPIAKEVAQYIEGGWIQPLRNTSYKFPNPKEALADAIDA 1074

  Fly   918 AVKVNKKKSVGVSR----TFDDDSFVCEKGSYRNNLRKKNELRSFGAVESDGDEHLNGYISQDMF 978
            |........:.:|.    :||.        ||::.         :|::..|| :|.:|.:...:.
plant  1075 AGPTLGPTLLSMSEFLMSSFDQ--------SYQSR---------YGSILMDG-QHPDGSLGYTVL 1121

  Fly   979 ------HSAPMMLNLLQNVILRLSYPMQTDLVVLVENHPLPTQLSQKINVLDNKIAHIHVPLVVG 1037
                  |:.|:.:|::...||||: ....::.:...|||||...:|:|...|  :......::|.
plant  1122 HNGTCQHAGPIYINVMHAAILRLA-TGNKNMTIQTRNHPLPPTKTQRIQRHD--LDAFSAAIIVN 1183

  Fly  1038 CIIPLTVSVFVIPLVEEEIYDVRFLQHMAGLGLKVFWGINLFWDWFTFFVYSVIIVVIMSLMGIG 1102
            .......:.|.:|:|:|.....:..|.::|:.:..:|.....||:.:|...|...:::....|:.
plant  1184 IAFSFIPASFAVPIVKEREVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPSTFAIILFYAFGLE 1248

  Fly  1103 GF-GFYENAIMVVLLTTFGLAALPLTYLVSMFVNKSIVRAFLVSVLLQGVSGLVLYIIYWDV--- 1163
            .| |.......|::|..:|||....||.::.|..:..: |..|.:::...|||:|.:|.:.:   
plant  1249 QFIGIGRFLPTVLMLLEYGLAIASSTYCLTFFFTEHSM-AQNVILMVHFFSGLILMVISFVMGLI 1312

  Fly  1164 -----ANSNTIFFYAACMSPGFSLLDGVSNVYAQNLEQAICIDKCEATDSCTEENMNEVVPNCKF 1223
                 |||....|:.  :||||...||::::..  |.|.:           .:::.:.|      
plant  1313 PATASANSYLKNFFR--LSPGFCFSDGLASLAL--LRQGM-----------KDKSSHGV------ 1356

  Fly  1224 DTFFKWAAPGILPPILYMVLSALIFLMLIFWIELHRREKKFHTS-----RDLRKMR-----TATY 1278
               |:|...|  ..|.|:.|.::.:.::...:||...:|....|     ::|:..:     ::|.
plant  1357 ---FEWNVTG--ASICYLGLESIFYFLVTLGLELMPVQKVMSFSIGEWWQNLKAFKQGAGSSSTE 1416

  Fly  1279 PF-------------DDGDVADVKQKIAE--ADNT----KAKQSVFLVDQVEARVPAAGKRIHTV 1324
            |.             ||.||.:.:.::..  :|||    :..:.|:..|:......|    :.::
plant  1417 PLLKDSTGAISTDMEDDIDVQEERDRVISGLSDNTMLYLQNLRKVYPGDKHHGPKVA----VQSL 1477

  Fly  1325 SFALNKYMSMGIFGPRNSGKSHLMRQLVGQRGFAFGEIYVRGLDFKYDLESIHTYMGYSPQHRGL 1389
            :|::......|..|...:||:..:..|.|:.....|..::.|.|.....::|..::||.||...|
plant  1478 TFSVQAGECFGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIVASPKAIRQHIGYCPQFDAL 1542

  Fly  1390 LNELTPREHIRLLCMIRGVPEAKIGEKMHDLCLMLNMTGWMHRKCSLLTAEKRHKLKIALALVAY 1454
            ...||.:||:.|...|:||.:.:|...:.:..:..::....|:....|:...:.||.:|:|::..
plant  1543 FEYLTVKEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHSHKPSFTLSGGNKRKLSVAIAMIGD 1607

  Fly  1455 NKILVLDEPTCGMPATTRREIWNIL-RYIRYCGKT-IIFATNDELECKILADFIILFQDSEMLAI 1517
            ..|::||||:.||....:|.:|::: |.....||| :|..|:...|.:.|...|.:.....:..|
plant  1608 PPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCI 1672

  Fly  1518 GSLQYLRYKYSHGFYLEVR-----------------------------LIRD-----GA------ 1542
            ||.|:|:.:|.:...|||:                             |:.|     |.      
plant  1673 GSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITP 1737

  Fly  1543 -TLAESEENLRKD-VENLAKF------------------VNFLHNRSELVGR--------LNNWF 1579
             |.:.||.:|..: |:.:|||                  |.|....||.:.|        ...|:
plant  1738 DTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPEEDVRFDDQLSEQLFRDGGIPLPIFAEWW 1802

  Fly  1580 ------------------------------KFYVPVGH--IVYSFLYGAMEKNKLRLNVSDYCIY 1612
                                          |:.:|.|.  :..:..:|.:|:|:.||.:::|.|.
plant  1803 LTKEKFSALDSFIQSSFPGATFKSCNGLSIKYQLPFGEGGLSLADAFGHLERNRNRLGIAEYSIS 1867

  Fly  1613 QADMMSV 1619
            |:.:.::
plant  1868 QSTLETI 1874

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1801NP_728408.3 ABC2_membrane_3 <246..379 CDD:463674 37/200 (19%)
rim_protein <514..1537 CDD:130324 253/1224 (21%)
ABCA1NP_850354.2 rim_protein <204..1684 CDD:130324 321/1616 (20%)

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