DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1801 and Abca2

DIOPT Version :9

Sequence 1:NP_728408.3 Gene:CG1801 / 33104 FlyBaseID:FBgn0031171 Length:1655 Species:Drosophila melanogaster
Sequence 2:XP_006233707.2 Gene:Abca2 / 79248 RGDID:620238 Length:2435 Species:Rattus norvegicus


Alignment Length:1963 Identity:370/1963 - (18%)
Similarity:697/1963 - (35%) Gaps:555/1963 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 FTSEVTKNVAKTL-ELSSTVGYESESEMQNQFDERTTLAGIVFNDLRDDGTPLTLSISIRFPSEF 158
            |.|:|:.::.|.. :..|.|.|......|   |..|..|.::|...:|...|..:...||..|.|
  Rat   571 FMSKVSVDIFKGFPDEESIVNYTLNQAYQ---DNVTVFASVIFQTRKDGSLPPHVHYKIRQNSSF 632

  Fly   159 RTIAPFLTEDRLWITRCSGRINP---GRDRAKHDKQQDIYIREGFLQLQHQIFVEWYHQLRKDIV 220
                   ||....|.|...|..|   ||          .|...||:.:|..|        .:.|:
  Rat   633 -------TEKTNEIRRAYWRPGPNTGGR----------FYFLYGFVWIQDMI--------ERAII 672

  Fly   221 STYPEPNVEVYNILLKAADEPCSVMSVAQLPTFLYNFIYLLPFLNI----------IRNVAAQVE 275
            :|:...:|......::....||....     .||:...:::|...:          |:::.|:.|
  Rat   673 NTFVGHDVVEPGNYVQMFPYPCYTRD-----DFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKE 732

  Fly   276 DGVMVHQWHYGYSFGMQWGIKFLVLFLRMCILGVIYTIML-----------LAFWGFGGREGEFS 329
            ..:.......|.:..:.|...|:..|:::.|.....|.:|           |..|          
  Rat   733 HRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVLIIW---------- 787

  Fly   330 GTGTIAFVCFITLYTVEIIITGMVVAKLF-----ANPTNAVLFALMLWLFMYAAF---------- 379
                    .|:.:|.|..|:...:|:.|:     |:....:::.|....:||.|.          
  Rat   788 --------LFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKIT 844

  Fly   380 ----CI----------ILERYWDIHKYYVFFILVAFCNCQMH-FSMSLFRNCIEKPEMVNTIDFV 429
                ||          :..:|:.:::       ||....|.| ||.|        |...:..:.:
  Rat   845 AFEKCIASLMSTTAFGLGSKYFALYE-------VAGVGIQWHTFSQS--------PVEGDDFNLL 894

  Fly   430 LIFTSAISSALIYFLILLAIQWRMPGTFLSRRIVNNRPRK------------QQESDT------- 475
            |..|..:...::|.::...|:...||.:       ..||.            ...::|       
  Rat   895 LAVTMLMVDTVVYGVLTWYIEAVHPGMY-------GLPRPWYFPLQKSYWLGSGRTETWEWSWPW 952

  Fly   476 ------TIMYLGRAPSFQNFEFGDVGSVE--------LMRLRHVSTSHRDSERKILKNISMRIYR 526
                  ::|...:|.:.::..|.:...:|        ::.:..::..:::.::..|..:|:.:|.
  Rat   953 AHAPRLSVMEEDQACAMESRHFEETRGMEEEPTHLPLVVCVDKLTKVYKNDKKLALNKLSLNLYE 1017

  Fly   527 GEVFVILGHIGSGKLTLLRILAGLKFPLRGNVYIMGNPFEPN-GEARRLVDFRFDEHGLNKHLTV 590
            .:|...|||.|:||.|.:.||.||..|..|:..|.|:..... .|.|:.:......:.|...|||
  Rat  1018 NQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDQLTV 1082

  Fly   591 EQTIDYHVRLKLSPSESDRYEIERRKWLAILDQHVES-RGVRIGKLSSGSMKLVALCCCLAGDTP 654
            |:.:.::.|||....|..|.|:::    .|.|..:.: |...:..||.|..:.:::.....|.:.
  Rat  1083 EEHLWFYSRLKSMAQEEIRKEMDK----MIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSR 1143

  Fly   655 IIILEEPTTQLTGREAQIFWSIVHAEKENRAFIIATYNVGEAEHVADRIGILSMGVLEASGTPFF 719
            .|||:|||..:.....:..|.::...|..|..:::|:::.||:.:.|||.|:|.|.|:..|:|.|
  Rat  1144 AIILDEPTAGVDPYARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLF 1208

  Fly   720 LRSKFSSSVDLVIIKKPHVP----------------------DQPITDYINQFMQNIEPENEIGD 762
            |:..:.....|.::|:|..|                      :..::.:|.:.:.:....::...
  Rat  1209 LKGAYGDGYRLTLVKRPAEPGTSQEPGMASSPSGRPQLSNCSEMQVSQFIRKHVASSLLVSDTST 1273

  Fly   763 SLTYRLP--VIYRPRLQKLLIHLEIDRKMLGIENVRVVGAELSDIYMTLVTSFRLQQQMIPDVTQ 825
            .|:|.||  .:.:...::|...||.....|.:.:..::...|.::::.:....:..:....||.:
  Rat  1274 ELSYILPSEAVKKGAFERLFQQLEHSLDALHLSSFGLMDTTLEEVFLKVSEEDQSLENSEADVKE 1338

  Fly   826 TFKYQVVSQKQLT---------------------------------------------------- 838
            :.|..:...:.||                                                    
  Rat  1339 SRKDALPGAEGLTAVESQAGNLARCSELAQSQASLQSASSVGSARGDEGAGYTDGYGDYRPLFDN 1403

  Fly   839 -----------------------KQRMRAMFYK---------KMIHTAPN----VWPIIMIFTSF 867
                                   .:::...:.|         |..|.|..    :...|::...|
  Rat  1404 LQDPDSVSLQEAEMEALARVGQGSRKLEGWWLKMRQFHGLLVKRFHCARRNSKALCSQILLPAFF 1468

  Fly   868 VLIAIIARLSV--LLDMP-------------KERQNSIHIGFRE-------------PEDVVK-- 902
            |.:|:...|||  :.|:|             :.|.|.|.....|             |:.:|.  
  Rat  1469 VCVAMTVALSVPEIGDLPPLVLSPSQYHNYTQPRGNFIPYANEERREYRLRLSPDASPQQLVSTF 1533

  Fly   903 YLPN-------LKDCGYIDIRSAVKVNKKKSVGVSRTF--------------------------- 933
            .||:       ||......:...:.::..:|..::..|                           
  Rat  1534 RLPSGVGATCVLKSPANGSLGPMLNLSSGESRLLAARFFDSMCLESFTQGLPLSNFVPPPPSPAP 1598

  Fly   934 -------DDDS-----------------------------------------FVCEK--GSYRNN 948
                   |:||                                         |.|..  |.:...
  Rat  1599 SDSPLSPDEDSLLAWNTSLPPTAGPETWTWAPSLPRLVHEPVRCTCSAQGTGFSCPSSVGGHPPQ 1663

  Fly   949 LR-----------------------KKNELRSFGAVESDGDEHLNGYISQDM------------- 977
            :|                       .:..|..:||:..       |.|.:.:             
  Rat  1664 MRVVTGDILTDITGHNVSEYLLFTSDRFRLHRYGAITF-------GNIQKSIPAPIGTRTPLMVR 1721

  Fly   978 ----------------FHSAPMMLNLLQNVILRLSYPMQ----TDLVVLVENHPLPTQLSQKINV 1022
                            :||.|..||.|.|.|||.:.|..    ....:.|.|||: .:.|..:: 
  Rat  1722 KIAVRRVAQVLYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPM-NKTSASLS- 1784

  Fly  1023 LDNKIAHIHVPLVVGCIIPLTV--SVFVIPLVEEEIYDVRFLQHMAGLGLKVFWGINLFWDWFTF 1085
            ||..:....|.:.:..|:.::.  :.||:.||.|:....:.||.::|....::|..|..||...:
  Rat  1785 LDYLLQGTDVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPVIYWLANYVWDMLNY 1849

  Fly  1086 FVYSVIIVVIMSLMGIGGFGFYENAIMVV-LLTTFGLAALPLTYLVSM-FVNKSIVRAFLVSV-L 1147
            .|.:...::|:.:..:..:....|...|: |...:|.:..|:.|..|. |...|....||:.: |
  Rat  1850 LVPATCCIIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINL 1914

  Fly  1148 LQGVSGLV----LYIIYWD----VANSNTIFFYAAC--MSPGFSLLDGVSNVYAQNLEQAICIDK 1202
            ..|::..|    |.:...|    |.||    :..:|  :.|.::|..|:       :|.|.    
  Rat  1915 FIGITATVATFLLQLFEHDKDLKVVNS----YLKSCFLIFPNYNLGHGL-------MEMAY---- 1964

  Fly  1203 CEATDSCTEENMNEVVPNC-KFDTF---FKWAAPGILPPILYMVLSALIFLMLIFWIELHRREKK 1263
                    .|.:||..... :||..   |:|..  :...::.|.:...:...|....:       
  Rat  1965 --------NEYINEYYAKIGQFDKMKSPFEWDI--VTRGLVAMTVEGFVGFFLTIMCQ------- 2012

  Fly  1264 FHTSRDLRKMRTATYPF-DDGDVADVKQKI--AEADNTKAK----QSVFLVDQVEARVPAAGKRI 1321
            ::..|..:::..:|.|. ||.|||..:|::  .:|||...|    ..|:...:: .|:.|    :
  Rat  2013 YNFLRQPQRLPVSTKPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKI-GRILA----V 2072

  Fly  1322 HTVSFALNKYMSMGIFGPRNSGKSHLMRQLVGQRGFAFGEIYVRGLDFKYDLESIHTYMGYSPQH 1386
            ..:...:......|:.|...:||:...:.|.|......||.:|.|.....||..:...:||.||.
  Rat  2073 DRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKDLLQVQQSLGYCPQF 2137

  Fly  1387 RGLLNELTPREHIRLLCMIRGVP---EAKIG----EKMHDLCLMLNMTGWMHRKCSLLTAEKRHK 1444
            ..|.:|||.|||::|...:||:|   ||::.    ||       |.:|....:.....:...:.|
  Rat  2138 DALFDELTAREHLQLYTRLRGIPWKDEAQVVRWALEK-------LELTKCADKPAGSYSGGNKRK 2195

  Fly  1445 LKIALALVAYNKILVLDEPTCGMPATTRREIWNILRYIRYCGKTIIFATNDELECKILADFIILF 1509
            |..|:||:.|...:.|||||.||....||.:||::..:...|::::..::...||:.:...:.:.
  Rat  2196 LSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEAVCTRLAIM 2260

  Fly  1510 QDSEMLAIGSLQYLRYKYSHGFYLEVRLIRDGATLAESEENLRKDVENLAKFVNFLHNRSELVGR 1574
            .:..:..:||:|:|:.::..|:.:.||        .:|.:|    |:::.:|.|.....:.|..|
  Rat  2261 VNGRLRCLGSIQHLKNRFGDGYMITVR--------TKSSQN----VKDVVRFFNRNFPEAMLKER 2313

  Fly  1575 LNNWFKFYVPVGHIVYSFLYGAMEKNKLRLNVSDYCIYQADMMSVVAQVQETRAQLKHHLVQTEG 1639
            .:...::.:...||..:.::..||.....|.:.||.:.|..:.:|.....:.::.   ::.|.|.
  Rat  2314 HHTKVQYQLKSEHISLAQVFSKMEHVVGVLGIEDYSVSQTTLDNVFVNFAKKQSD---NVEQQEA 2375

  Fly  1640 -----PLPLDTTS 1647
                 |.||...|
  Rat  2376 EPSTLPSPLGLLS 2388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1801NP_728408.3 ABC2_membrane_3 <246..379 CDD:289468 25/158 (16%)
ABC2_membrane_4 <293..448 CDD:289500 33/195 (17%)
EcfA2 499..717 CDD:224047 59/219 (27%)
P-loop_NTPase 500..721 CDD:304359 61/222 (27%)
ABC2_membrane_3 <972..1254 CDD:289468 69/333 (21%)
EcfA2 1307..1521 CDD:224047 57/220 (26%)
P-loop_NTPase 1324..1524 CDD:304359 56/206 (27%)
Abca2XP_006233707.2 rim_protein 1..2369 CDD:130324 364/1942 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342253
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.750

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