DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1801 and Abca3

DIOPT Version :10

Sequence 1:NP_728408.3 Gene:CG1801 / 33104 FlyBaseID:FBgn0031171 Length:1655 Species:Drosophila melanogaster
Sequence 2:NP_608445.2 Gene:Abca3 / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster


Alignment Length:1778 Identity:408/1778 - (22%)
Similarity:782/1778 - (43%) Gaps:234/1778 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LLFKRYIRIELNLWRRTLFEIVALVIMVLVIFLNPI--AHSKRLLYTTTENENEQSIVSHKLQDI 69
            ||:|.:.....:.|:..:..::..:..:|::.:..:  ...|.:.|...:|..:.:::.|.|...
  Fly    13 LLWKNWTLQWNHKWQMVIELVLPAIFSLLLVLVRTLVDTEQKGVRYYNEQNLTDLNLLQHSLHRS 77

  Fly    70 NILTRM----ADSKREKT------KYILAFTPETTFTSEVTKNVAKTLELSSTVGYESESEMQNQ 124
            :.|.::    |.::|.|.      ::||.::|......::.:...::|..:...  |||:..|.:
  Fly    78 SYLGKLIALIAPNRRRKNGGFSKFEFILCYSPVNPVLKKLVEEAWQSLGKNKIC--ESENATQLE 140

  Fly   125 FD--ERTTLAGIVFND-----LRDDGTPLTLSISIRFPSEFRTIAPFLTEDRLWITRCSGRINPG 182
            .|  .:...||:.|:|     ..:|..|.....::|||:|.||..  :.....|:|.   |:.|.
  Fly   141 LDTVSKNAFAGVQFDDAWANLTENDPLPNDFHFALRFPAELRTAT--IAIANTWLTM---RLFPT 200

  Fly   183 RD----RAKHDKQQDI---YIREGFLQLQHQIFVEWYHQ------LRKDIVSTYPEPNVEVYNIL 234
            .|    |.:.|....|   |:|||||.|||.:.:.:..|      |...::..||.| ..:::.|
  Fly   201 IDLTGPRNEGDDDGGIPPGYLREGFLPLQHSLSMAYLRQKSGEQDLPNVVMKRYPFP-AYIFDPL 264

  Fly   235 LKAADEPCSVMSVAQLPTFLYNFIYLLPFLNIIRNVAAQVEDGVMVHQWHYGYSFGMQWGIKFLV 299
            |:...   |:||:..|.:|:|...|:..::...:.  .|:::.:.:    .|.|..:.|...|:.
  Fly   265 LEGMS---SIMSLIILLSFIYPCTYITKYITAEKE--KQLKEVMKI----MGLSNWLHWTAWFVK 320

  Fly   300 LFLRMCILGVIYTIMLLAFWGFGGREGEFSGTGTIAFVCFITLYTVEIIITGMVVAKLFANPTNA 364
            .|:.:.|..::..|::...|  .......:.....|.|.|:.:|.|..|....::|..|:..:.|
  Fly   321 SFIMLTISAILIAILVKINW--SEDVAVLTHANFTALVFFLIIYIVSSICFCFMMATFFSRASTA 383

  Fly   365 VLFALMLWLFMYAAFCIILERYWDIH-KYYVFFILVAFCNCQMHFSMSL------------FRNC 416
            .....::|...|..:...:..|.|:. ...:.:.|::  |..|.|.:.|            :.|.
  Fly   384 AAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLIS--NTAMGFGIKLILGFEGTGEGLQWSNF 446

  Fly   417 IEKPEMVNTIDFVLIFTSAISSALIYFLILLAIQWRMPGTFLSRRIVNNRPRKQQESDTTIMYLG 481
            .....:.:|:....:....:.|.:||.:|.|.::..|||:|       ..||......|...:.|
  Fly   447 FTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSF-------GVPRPWNFPFTREFWCG 504

  Fly   482 -----------------RAPSFQNFEFGDVGSVELMRLRHVSTSHRDSERKILKNISMRIYRGEV 529
                             |.|  :.||....|....:::||:  ..|...:.::|.:||.::..|:
  Fly   505 EREYTGVEDIPNGHVEQRDP--KAFETEPEGKHIGLQMRHL--KKRFGNKMVVKGLSMNMFEDEI 565

  Fly   530 FVILGHIGSGKLTLLRILAGLKFPLRGNVYIMGNPFEPNGEARRLVDFRFDEHGLNKHLTVEQTI 594
            .|:|||.|:||.|.:.:|.|:..|..|...|.|:....|.|..|:......:|.:   |..|.::
  Fly   566 TVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQHNV---LFDEMSV 627

  Fly   595 DYHVRL--KLSPSESDRYEIERRKWLAILDQHVESRGVRIGKLSSGSMKLVALCCCLAGDTPIII 657
            ..|:|.  ::........|.|..|:|.:::.. :...|...|||.|..:.:::||.|.|||.:::
  Fly   628 SNHIRFFSRMKGLRGKAVEQEVAKYLKMIELE-DKANVASSKLSGGMKRKLSVCCALCGDTKVVL 691

  Fly   658 LEEPTTQLTGREAQIFWSIVHAEKENRAFIIATYNVGEAEHVADRIGILSMGVLEASGTPFFLRS 722
            .:||::.:.....:..|.::..||..|..::.|:.:.||:.:.|||.|:..|.|:..||.|||:.
  Fly   692 CDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKK 756

  Fly   723 KFSSSVDLVIIKKPHVPDQPITDYINQFMQNIEPENEIGDSLTYRLPVIYRPRLQKLLIHLEIDR 787
            ::.|...|:.:|:.......:|..:|:::..::||.:||..|:|:||.....:.:::...||...
  Fly   757 QYGSGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGAELSYQLPDSASAKFEEMFGQLEEQS 821

  Fly   788 KMLGIENVRV-----------VGAE------LSDIY--MTLVTSFRLQ---QQMIPDVTQTFKYQ 830
            ..|.:....|           ||||      :.|.:  |...:.||.:   :.:..|...:...:
  Fly   822 DELHLNGYGVGITSMEEVFMKVGAEKDNTGNIKDQHEIMNGGSGFRGEDDNESVQSDGIFSENRR 886

  Fly   831 VVSQKQLTKQRMRAMFYKKMIHTAPN-----VWPIIMIFTSFVLIAIIARLSVLLDMPKERQNSI 890
            ::...||...:.:||..||.::|..|     :..|:.:|...|.|.||.......::     ..|
  Fly   887 LLQGLQLLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVTILIIKTQGTFQEL-----KPI 946

  Fly   891 HIGFREPEDVVKYL--PNLKD-CG------YIDIRSAVKVNKKKSVGVSRTFDDDSFVCEKGSYR 946
            .|...:....|..|  .|::: .|      |.|:..:...|....:..::.|:|         |.
  Fly   947 TISLTQYPLAVTVLDRSNVQNGTGYEIANKYEDLARSYGSNYGLELTGTQGFED---------YI 1002

  Fly   947 NNLRKKNELR---SFGAVESDGDEHLNGYISQDMFHSAPMMLNLLQNVILRLSYPMQTDLVVLVE 1008
            .:|.|..::|   .:....:..:..:..:::....|:||:.:|::.|.|....:  .:.:.:.|.
  Fly  1003 LDLGKTIQVRINSRYLVAATITESKITAWLNNQALHTAPLTVNMVHNAIADKLF--GSSVKIQVT 1065

  Fly  1009 NHPLP-------TQLSQKINVLDNKIAHIHVPLVVGCIIPLTV-SVFVIPLVEEEIYDVRFLQHM 1065
            |.|||       :|||...|:.....:::       |.....| |::::.|::|.....:.||.:
  Fly  1066 NAPLPYTTSTLLSQLSTGNNLGTQLASNL-------CFCMCFVSSIYILFLIKERESRAKLLQFV 1123

  Fly  1066 AGLGLKVFWGINLFWDWFTFFVYSVIIVVIMSLM---GIGGFGFYENAIMVVLLTTFGLAALPLT 1127
            .|:.:..||......|:.::.|.::|:|:.:...   |:..||  |.....:||..||.|.||..
  Fly  1124 GGVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLSTFG--ELGRYYLLLLLFGFAVLPFI 1186

  Fly  1128 YLVSMFVNK---SIVRAFLVSVLLQGVSGLVLYII-------YWDVANSNTIFFYAACMSPGFSL 1182
            |::|:|..:   ...|..:|::.    .|:.|:|:       .:|..::..|..:...:.|.|||
  Fly  1187 YIMSLFFREPATGFARVSIVNIF----CGMALFIVVVVMSSELFDTKDTADILGWIFRIFPHFSL 1247

  Fly  1183 LDGVSNVYAQNLEQAIC--------IDKCEATDSCTEENMNEVVPNCKFDTFFKWAAPGILPPIL 1239
            ...::.||.....:..|        |..||....|           |....:|.|..||:||..:
  Fly  1248 AMSLNKVYTNTATRNACAKAGALPPILLCELVPQC-----------CNLKPYFAWEEPGVLPETV 1301

  Fly  1240 YMVLSALIFLMLIFWIELHRREKKFHTSRDLRKMRTATYPFD---DGDVADVKQKIAEADNTKAK 1301
            ||.::.::|.::|..:|.....:.....|.|.. :....|.:   |.|||:.:::|.:..:.:..
  Fly  1302 YMAVTGVVFFLIIIVLEFRLINELMFKIRQLIS-KPPPPPTEGQLDDDVANERERILQMSSNELA 1365

  Fly  1302 QSVFLVDQVEARVPAAGKRIHTVSFALNKYMSMGIFGPRNSGKSHLMRQLVGQRGFAFGEIYVRG 1366
            ....::|:| .:.......::.||..:.:....|:.|...:||:...:.:.|....:.|..||:|
  Fly  1366 TKNLVLDRV-TKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG 1429

  Fly  1367 LDFKYDLESIHTYMGYSPQHRGLLNELTPREHIRLLCMIRGVPEAKIGEKMHDLCLMLNMTGWMH 1431
            |..:.::.||:..:||.||...||::||.||.:|:.||:|||.|::|.:...||.........:.
  Fly  1430 LSLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHID 1494

  Fly  1432 RKCSLLTAEKRHKLKIALALVAYNKILVLDEPTCGMPATTRREIWNILRYIRYCGKTIIFATNDE 1496
            ::....:...:.||..|:|::....::.|||||.||....||::||::..||..||:|:..::..
  Fly  1495 KQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSM 1559

  Fly  1497 LECKILADFIILFQDSEMLAIGSLQYLRYKYSHGFYLEVRLIRDGATLAES-----------EEN 1550
            .||:.|...:.:..:.|...|||.|:|:.|:|.|..|::::.|:...|.::           |:.
  Fly  1560 EECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYARNPDEQT 1624

  Fly  1551 L-----RKDVENLAKFVNFLHNRSELVGRLNNWFKFYVPVGHIVYSFLYGAMEKNKLRLNVSDYC 1610
            :     ::|::.:.:||...:..|.|.........||:|:..:.:|.::|.||.|:.:|||.||.
  Fly  1625 VPAQMSQRDIDAVKEFVETEYPNSILQEEYQGILTFYIPLTGVKWSRIFGLMESNRDQLNVEDYS 1689

  Fly  1611 IYQADMMSVVA-----QVQETRA 1628
            :.|..:..:..     |.::|||
  Fly  1690 VSQTTLEEIFLEFAKYQREDTRA 1712

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1801NP_728408.3 ABC2_membrane_3 <246..379 CDD:463674 25/132 (19%)
rim_protein <514..1537 CDD:130324 266/1095 (24%)
Abca3NP_608445.2 rim_protein <137..1708 CDD:130324 384/1646 (23%)

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