DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1801 and Abca1

DIOPT Version :9

Sequence 1:NP_728408.3 Gene:CG1801 / 33104 FlyBaseID:FBgn0031171 Length:1655 Species:Drosophila melanogaster
Sequence 2:XP_038965774.1 Gene:Abca1 / 313210 RGDID:631344 Length:2263 Species:Rattus norvegicus


Alignment Length:2007 Identity:390/2007 - (19%)
Similarity:722/2007 - (35%) Gaps:602/2007 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 WRRTL--FEIVALVIMVLVIFL--NP--IAHSKRLLYTTTE--NENEQSI--VSHKLQDINILTR 74
            |.|.|  .:..|..||.   ||  ||  :......:||..|  ||..|:|  :|..::.:|:   
  Rat   449 WERKLDGLDWTAQDIMA---FLAKNPEDVQSPNGSVYTWREAFNETNQAIQTISRFMECVNL--- 507

  Fly    75 MADSKREKTKYILAFTPETTFTSEVTKNVAKTLELSSTVGYESESEMQNQFDERTTLAGIVFNDL 139
               :|.|            ...:|| :.:.|::||               .|||...|||||..:
  Rat   508 ---NKLE------------PIPTEV-RLINKSMEL---------------LDERKFWAGIVFTGI 541

  Fly   140 RDDGTPLTLSISIRFPSEFRTI-APFLTEDRLWITRCSGRINPGRDRAKHDKQQDI-YIREGFLQ 202
            ..|...|...:..:...:...: .....:|..|        :||   .:.|..:|: |:..||..
  Rat   542 TPDSVELPHHVKYKIRMDIDNVERTNKIKDGYW--------DPG---PRADPFEDMRYVWGGFAY 595

  Fly   203 LQ---HQIFVEWYHQLRKDIVSTYPEPNVEVYNILLKAADEPCSVMSV------AQLPTFLYNFI 258
            ||   .|..:.         |.|..|....||   ::....||.|..:      ..:|.|: ...
  Rat   596 LQDVVEQAIIR---------VLTGTEKKTGVY---VQQMPYPCYVDDIFLRVMSRSMPLFM-TLA 647

  Fly   259 YLLPFLNIIRNVAAQVEDGVMVHQWHYGYSFGMQWGIKFLVLFLRMCILGVIYTIMLLAFWGFGG 323
            ::.....||:::..:.|..:.......|...|:.|...|:...:.:.:...:..|:|        
  Rat   648 WIYSVAVIIKSIVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVIIL-------- 704

  Fly   324 REGEF--SGTGTIAFVCFITLYTVEIIITGMVVAKLFANPTNAVLFALMLWLFMYAAF--CIILE 384
            :.|:.  ....::.|| |::::.|..|:...:::.||:....|.....:::..:|..:  |:..:
  Rat   705 KLGDLLPYSDPSVVFV-FLSVFAVVTILQCFLISTLFSRTNLAAACGGIIYFTLYLPYVLCVAWQ 768

  Fly   385 RY--WDIHKYYVFFILVAF-CNCQMHFSM-----------SLFRNCIEKP--EMVNTIDFVLIFT 433
            .|  :.|..:......||| ..|: :|::           :||::.:|:.  .:..::..:|..|
  Rat   769 DYVGFSIKIFASLLSPVAFGFGCE-YFALFEEQGIGVQWDNLFKSPVEEDGFNLTTSVSMMLFDT 832

  Fly   434 SAISSALIYFLILLAIQWRMPGTFLSRRIVNNRPRKQQESDTTIMYLGRAPSFQNFEFGD----- 493
                  .||.::...|:...||.:       ..||.        .|.   |..:::.||:     
  Rat   833 ------FIYGVMTWYIEAVFPGQY-------GIPRP--------WYF---PCTKSYWFGEEIDEK 873

  Fly   494 -------VGSVEL------------MRLRHVSTSHRDSERKILKNISMRIYRGEVFVILGHIGSG 539
                   .|:.|:            :.::::...:||..:..:..:::..|.|::...|||.|:|
  Rat   874 SHPGSSQKGASEICMEEEPTHLKLGVSIQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAG 938

  Fly   540 KLTLLRILAGLKFPLRGNVYIMGNPFEPNGEARRLVDFRFDEHGLNKH-------------LTVE 591
            |.|.:.||.||..|..|..||:|.            |.|.:.:.:.::             ||||
  Rat   939 KTTTMSILTGLFPPTSGTAYILGK------------DIRSEMNSIRQNLGVCPQHNVLFDMLTVE 991

  Fly   592 QTIDYHVRLKLSPSESDRYEIERRKWLAILDQHV----ESRGVRIG-----------KLSSGSMK 641
            :.|.::.|||                 .:.::||    |...:.:|           :||.|..:
  Rat   992 EHIWFYARLK-----------------GLSEKHVKAEMEQMALDVGLPPSKLKSKTSQLSGGMQR 1039

  Fly   642 LVALCCCLAGDTPIIILEEPTTQLTGREAQIFWSIVHAEKENRAFIIATYNVGEAEHVADRIGIL 706
            .:::.....|.:.::||:|||..:.....:..|.::...::.|..|::|:::.||:.:.|||.|:
  Rat  1040 KLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGRTIILSTHHMDEADILGDRIAII 1104

  Fly   707 SMGVLEASGTPFFLRSKFSSSVDLVIIK--------------------KPHVPDQP--------- 742
            |.|.|...|:..||:::..:...|.::|                    |..||:.|         
  Rat  1105 SHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLSSCRNSSSTVSCLKKVVPELPAAGQSGGRG 1169

  Fly   743 ---------------ITDYINQFMQNIEPENEIGDSLTYRLPVIYRPRLQKLLIHL--EIDRKM- 789
                           |::.|.:.:.......:||..|||.||  |....:...:.|  |||.:: 
  Rat  1170 GEVQRLVALTQDVSAISNLIRKHVSEARLVEDIGHELTYVLP--YEAAKEGAFVELFHEIDDRLS 1232

  Fly   790 -LGIENVRVVGAELSDIYMTLV--------------------TSFRLQQQMI------------- 820
             |||.:..:....|.:|::.:.                    .:|..:|..:             
  Rat  1233 DLGISSYGISETTLEEIFLKVAEESGVDAETSDGTLPARRNRRAFGDKQSCLHPFTEDDAVDPND 1297

  Fly   821 ----PDVTQT---------FKYQVVSQKQLTKQRMRAMFYKKMI---HTAPNVWPIIMIFTSFVL 869
                |:..:|         ..||:...| ||:|:..|:.:|:::   .:....:..|::...||.
  Rat  1298 SDLDPESRETDLLSGMDGKGSYQLKGWK-LTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVC 1361

  Fly   870 IAIIARL-----------------------SVLLDMPKE--RQNSIHIGFREP------------ 897
            ||::..|                       .|..|.|::  .|..::...::|            
  Rat  1362 IALVFSLIVPPFGKYPNLELQPWMYNEQYTFVSNDAPEDMGTQELLNALTKDPGFGTRCMEGNPI 1426

  Fly   898 ---------ED----------------------------------VVKYLP-------------- 905
                     ||                                  :.|.||              
  Rat  1427 PNTPCLVGEEDWTTGPVPQTLMDLFQNGNWTMKNPSPSCQCSSDKIKKMLPVCPPGAGGLPPPQR 1491

  Fly   906 --------------NLKDC---GYIDI-----RSAVKVNK------------------------- 923
                          |:.|.   .|:.|     ::.|.||:                         
  Rat  1492 KQKTADILQNLTGRNISDYLVKTYVQIIAKSLKNKVWVNEFRYGGFSLGVSDSQALPPSQEVNNA 1556

  Fly   924 ----KKSVGVSRTFDDDSFVCEKGSYRNNLRKKNELRSFGAVESDGDEHLNGYISQDMFHSAPMM 984
                ||.:.:::....|.|:...|.:...|..||.::.              :.:...:|:....
  Rat  1557 IKQMKKLLKLTKDSSADRFLSSLGRFMTGLDTKNNVKV--------------WFNNKGWHAISSF 1607

  Fly   985 LNLLQNVILRLSY-----PMQTDLVVLVENHPL---PTQLSQ------KINVLDNKIAHIHVPLV 1035
            ||::.|.|||.:.     |.|..:...  ||||   ..|||:      .::||        |.:.
  Rat  1608 LNVINNAILRANLQKGENPSQYGITAF--NHPLNLTKQQLSEVALMTTSVDVL--------VSIC 1662

  Fly  1036 VGCIIPLTVSVFVIPLVEEEIYDVRFLQHMAGLGLKVFWGINLFWDWFTFFVYSVIIVVIMSLMG 1100
            |...:....:.||:.|::|.:...:.||.:.|:...::|..|..||...:.|.:.::|:|.....
  Rat  1663 VIFAMSFVPASFVVFLIQERVSKAKHLQFICGVKPVIYWLSNFVWDMCNYVVPATLVVIIFICFQ 1727

  Fly  1101 IGGFGFYEN-AIMVVLLTTFGLAALPLTYLVSMFVNK--SIVRAFLVSV-LLQGVSGLVLYIIYW 1161
            ...:....| .::.:||..:|.:..||.|..| ||.|  |.....|.|| |..|::|.|...:..
  Rat  1728 QKSYVSSTNLPVLALLLLLYGWSITPLMYPAS-FVFKIPSTAYVVLTSVNLFIGINGSVATFVLE 1791

  Fly  1162 -----------DVANSNTIFFYAACMSPGFSLLDGVSNVYAQNLEQAICIDKCEATDSCTEENMN 1215
                       |:..|..:.|...|:..|  |:|.|.|       ||:       .|:......|
  Rat  1792 LFTNNKFNDINDILKSVFLIFPHFCLGRG--LIDMVKN-------QAM-------ADALERFGEN 1840

  Fly  1216 EVVPNCKFD----TFFKWAAPGILPPILYMVLSALIFLMLIFWIELHRREKKFHTSRDLRKMRTA 1276
            ..|....:|    ..|..|..|    :::.:::.||             :.:|.......|.|..
  Rat  1841 RFVSPLSWDLVGRNLFAMAVEG----VVFFLVTVLI-------------QYRFFIRPRPVKARLP 1888

  Fly  1277 TYPFDDGDVADVKQKIAEADNTKAKQSVFLVDQV-----EARVPAAGKRIHTVSFALNKYMSMGI 1336
            ....:|.||...:|:|.|..   .:..:..:.::     ..|.||    :..:...:......|:
  Rat  1889 PLNDEDEDVRRERQRILEGG---GQNDILEIKELTKIYRRKRKPA----VDRICVGIPPGECFGL 1946

  Fly  1337 FGPRNSGKSHLMRQLVGQRGFAFGEIYVRGLDFKYDLESIHTYMGYSPQHRGLLNELTPREHIRL 1401
            .|...:||:...:.|.|......|:..:.......::..:|..|||.||...:...||.|||:..
  Rat  1947 LGVNGAGKTSTFKMLTGDTAVTRGDALLNKNSILSNIHEVHQNMGYCPQFDAITELLTGREHLEF 2011

  Fly  1402 LCMIRGVPEAKIGEKMHDLCLMLNMTGWMHRKCSLLT-AEK---------RHKLKIALALVAYNK 1456
            ..::|||||.::|:          :..|..||..|:. .||         :.||..|:||:....
  Rat  2012 FALLRGVPEKEVGK----------VGEWAIRKLGLVKYGEKYASNYSGGNKRKLSTAIALIGGPP 2066

  Fly  1457 ILVLDEPTCGMPATTRREIWNILRYIRYCGKTIIFATNDELECKILADFIILFQDSEMLAIGSLQ 1521
            ::.|||||.||....||.:||....|...|::::..::...||:.|...:.:..:.....:||:|
  Rat  2067 VVFLDEPTTGMDPKARRFLWNCALSIIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQ 2131

  Fly  1522 YLRYKYSHGFYLEVRLIRDGATLAESEENLRKDVENLAKFVNFLHNRSELVGRLNNWFKFYVPVG 1586
            :|:.::..|:.:.||:           .....|::.:.:|.......|.|..:..|..::.:|..
  Rat  2132 HLKNRFGDGYTIVVRI-----------AGSNPDLKPVQEFFGLAFPGSVLKEKHRNMLQYQLPSS 2185

  Fly  1587 HIVYSFLYGAMEKNKLRLNVSDYCIYQADMMSVVAQVQETRAQLKH------HLVQT 1637
            ....:.::..:.::|.||::.||.:.|..:..|.....:.::...|      |..||
  Rat  2186 LSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNFAKDQSDDDHLKDLSLHKNQT 2242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1801NP_728408.3 ABC2_membrane_3 <246..379 CDD:289468 21/140 (15%)
ABC2_membrane_4 <293..448 CDD:289500 29/174 (17%)
EcfA2 499..717 CDD:224047 57/257 (22%)
P-loop_NTPase 500..721 CDD:304359 58/248 (23%)
ABC2_membrane_3 <972..1254 CDD:289468 73/314 (23%)
EcfA2 1307..1521 CDD:224047 56/228 (25%)
P-loop_NTPase 1324..1524 CDD:304359 54/209 (26%)
Abca1XP_038965774.1 rim_protein 1..2238 CDD:130324 387/2001 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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