DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1801 and Abca8a

DIOPT Version :9

Sequence 1:NP_728408.3 Gene:CG1801 / 33104 FlyBaseID:FBgn0031171 Length:1655 Species:Drosophila melanogaster
Sequence 2:NP_001268753.1 Gene:Abca8a / 303638 RGDID:1307333 Length:1615 Species:Rattus norvegicus


Alignment Length:1715 Identity:347/1715 - (20%)
Similarity:667/1715 - (38%) Gaps:393/1715 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 IRIELNLW------------------RRTLFEIV--ALVIMVLVIFLNPIAHSKRLLYTTTENEN 57
            ::.|:|:|                  |.||:|::  |.:::.|.:|..        |:...|..:
  Rat     2 VKREINVWQQTWALLCKNLLRKKRLKRDTLWELLYTAFILLCLSLFFE--------LHDVYEFSS 58

  Fly    58 EQSIVSHKLQDINILTRMADSKREKTKYILAFTPETTFTSEVTKNVAKTLELSSTVGYESESEMQ 122
                    |.|:::  ...||..:.| :.:|:||.|..|.|:...|       |.|.|.:..|:.
  Rat    59 --------LSDVDL--GRVDSFNDST-FAIAYTPVTPTTQEIMNRV-------SLVSYMTGREIL 105

  Fly   123 NQFDERTTLAGIVFNDLRDDGTPLTLSISIRFPSEFR--TIAPFLTEDRLWITRCSGRINPGRDR 185
             .|..:..:...:.... ||...:..|.:..:..:|.  |..|.:.|.:.....|. |..|.   
  Rat   106 -AFPNKENMTEFISKHY-DDAVGIIFSTAYSYHLKFMKGTRIPIIKEHQDHTAHCF-RYEPA--- 164

  Fly   186 AKHDKQQDIYIREGFLQLQHQI---FVEWYHQLRKDIVSTYPEPNVEVYNILLKAADEPCSVMS- 246
              .......:.|.||:.||..|   .:|         |:|    |..|...::....:...:.| 
  Rat   165 --ISCDLSAFWRHGFVALQAAINSAIIE---------VTT----NHSVMEEMMSLTGKYIKIDSF 214

  Fly   247 VAQ--LPTFLYNFIYLLPFLNIIRNVAAQVE------DGVMVHQWHYGYSFGMQWGIKF--LVLF 301
            :||  ..|..:.|:.::.|..:...::|.|.      ...|........:|.:.||:.:  :|..
  Rat   215 IAQEGTTTDYFLFLCIIAFSPLTYYISAGVTRERKKMKAFMTVMGLRDSAFWLSWGLLYGVIVFI 279

  Fly   302 LRMCILGVIYTIMLLAFWGFGGREGEFSGTGTIAFVCFITLYTVEIIITGMVVAKLFANP--TNA 364
            :.:.:..|:|::..:...||           .:.|..|. .|.:.:|....:::.|....  |:.
  Rat   280 VTLFLTFVVYSVQFVFMTGF-----------MMIFSLFF-FYGLSLISLSFLMSVLLKKSFLTDL 332

  Fly   365 VLFALML--WLFMYAAFCIILERYWDIHKYYVFFILVAFC-------NCQMHFSMSLFRNCIEKP 420
            |:|.|.:  ....:||    |.||..:...::..:|..|.       ..::.:.:....:....|
  Rat   333 VVFFLTVSCGSLGFAA----LYRYLPVSLEWLLSLLSPFAFMLGMTQLLRLDYDLESSGHPTGNP 393

  Fly   421 EMVNTIDFVLIFTSAISSALIYFLILLAIQWRMPGTFLSRR-----IVNNRPRKQQESDTTIMYL 480
            .:|....|:|.|     ..:.|.::....:..:||.:..|.     :.::....|..:|.|::..
  Rat   394 NVVIATVFLLFF-----DGVFYLMLTFYFEKVLPGEYGRRHPPLFFLKSSFWTGQNPADRTVLDN 453

  Fly   481 GRAPSFQNFEFGDVGS----VELMRLRHVSTSH--RDSERKILKNISMRIYRGEVFVILGHIGSG 539
            .|...|.:..|..|.:    .|::|:|:::..:  |....:.||::::.:|:|::..||||.|:|
  Rat   454 ERDYEFPDDSFEPVSTDFHGKEVIRIRNLTKEYIQRSKRTEALKDLTLDVYKGQITAILGHSGAG 518

  Fly   540 KLTLLRILAGLKFPLRGNVYIMGNPFEPNGEARRL-----------VDFRFDEHGLNKHLTVEQT 593
            |.|||.:|:||..|.:|.|.|..|......:...:           |.|.|        |||.:.
  Rat   519 KSTLLNVLSGLCVPTKGWVTIHDNKLSEMTDLESISKLTGVCPQCNVQFDF--------LTVREN 575

  Fly   594 IDYHVRLKLSPSESDRYEIERRKWLAILDQHVESRGVRIGKLSSGSMKLVALCCCLAGDTPIIIL 658
            :....::| ...|.|. |:: |..||:..:::::..|:  .||.|..:.:.....:.||..|.:|
  Rat   576 LRLFAKIK-GIQEVDN-EVQ-RVLLALEMKNIQNTLVQ--NLSGGQKRKLTFGIAILGDPQIFLL 635

  Fly   659 EEPTTQLTGREAQIFWSIVHAEKENRAFIIATYNVGEAEHVADRIGILSMGVLEASGTPFFLRSK 723
            :|||..|........|:::...|.:|..:.:|..:.||:.:|||...:|.|.|..:|:..||:.|
  Rat   636 DEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVFISQGKLRCAGSSLFLKKK 700

  Fly   724 FSSSVDLVI-------------IKKPHVPDQPITDYINQFMQNIEPENEIGDSL----TYRLPVI 771
            :.....|.:             :.|.|:||..:         :.|.|.::...|    |.:.|.:
  Rat   701 WGIGYHLSLQLSETCVHERITSLVKQHIPDSKL---------SAESEGKLNYILPLERTNKFPDL 756

  Fly   772 YRPRLQKLLIHLEIDR-KMLGIENVRVVGAELSDIYMTLVTSFRLQQQMIPDVTQTFKYQ----- 830
            ||          :::| ..|||||..|....|:::::.|.....:..    |:.:|...|     
  Rat   757 YR----------DLERCPDLGIENYGVSVTTLTEVFLKLEGKSAIDS----DIGETEDVQAGGTR 807

  Fly   831 ------------VVSQKQLTKQRMRAMFYK-----------KMIHTAPNVWPIIMIF---TSFVL 869
                        ::::...||..| |::::           |:.:...::..:|:|.   ...:|
  Rat   808 GPGRLDGEQFVSLLNEMSKTKGGM-ALWWQQLCAVTRLRFLKLKYRRKSIVILILILGIGLLHIL 871

  Fly   870 IAIIARLSVLLDMPKERQNSIHIGFREPEDVVKYLPNLKDCGYIDIRSAVKVNKKKSVGVSRTFD 934
            .|.:.||....|...|.  |.|..|..|..    .|.:      .:.:.:.:||     .....|
  Rat   872 SANVHRLVNQSDYCWEL--SPHTYFLTPGQ----RPQM------PLTNLLIINK-----TGEKID 919

  Fly   935 DDSFVCEKGSYRNNLRKKN---ELRSFGAVESDGDEHLNGYI---------------SQDMFHSA 981
            |         :.::|.::|   |:.:||......|...||.|               :....:..
  Rat   920 D---------FLHSLEQQNIALEVDAFGTRNGTEDSQYNGAIIVAGGEKNYNFTLACNTKRLNCF 975

  Fly   982 PMMLNLLQNVILRLSYP---MQTDLVVLVENHPLPTQLSQKINVLDNKIAHIHVPLVVGCIIPLT 1043
            |::::::.|.:|.|..|   :|||.    .:.|..|..:|..::| ...:.|   |::.|:.|  
  Rat   976 PVLVDIVSNALLGLFTPSVHIQTDR----SSFPEDTGYTQFYHLL-YMFSWI---LLMACVPP-- 1030

  Fly  1044 VSVFVIPLVEEEIYDVR--FLQHMAGLGLKVFW-GINLFWDWFTFFVYSVIIVVIMSLMGIGGFG 1105
                .|.:...:.|..|  |...::||....:| |..|    |...|||.:|:.:.       ..
  Rat  1031 ----YISMTSIDDYKNRAQFQLWISGLSPSAYWFGHAL----FEIPVYSALILSVY-------IA 1080

  Fly  1106 FYENAIMVVLLTT------------FGLAALPLTYLVSMFVNKSIVRAFLVSVLLQGVSGLVLYI 1158
            ||.:|....::||            :.::.:.:.|::|....|....:.:.|:....||.:.|.:
  Rat  1081 FYFSAPPESMITTRDLFIQILYAGGYAMSVIFMMYVISFICRKGRKNSGIWSLCFYIVSFISLCL 1145

  Fly  1159 IYWDVANSNTIFFYAACMSPGFSLLDGVSNVYAQNLEQAICIDKCEATDSCTEENMNEV--VPNC 1221
            :.:... .:|..|.:..:.|..:|: |.:.::.||.|                  ..|:  .|. 
  Rat  1146 MLFKFF-EDTFLFSSIALIPVVTLV-GCTLLHFQNHE------------------FPEISLYPE- 1189

  Fly  1222 KFDTFFKWAAPGILPPILYMVLSALIFLMLIFWIELHRREKKFH------------TSRDLRKMR 1274
            ::.|:..:.||              .|..|||...|...|:||.            :||..|...
  Rat  1190 RYYTYLFFLAP--------------FFHFLIFLFILRCLERKFGMKTMRMDPVFRISSRSDRVFN 1240

  Fly  1275 TATYP-FDDGDV-------------ADVKQK---IAEA--DNTKAKQSVFLVDQVEARVPAAGKR 1320
            ....| .:|.||             ||.::|   ||..  ...|.|:..|::        ...|:
  Rat  1241 NPEEPEGEDEDVSLERVRTANALTSADFQEKPVIIASCLRKEYKGKKKCFVL--------KGKKK 1297

  Fly  1321 IHT--VSFALNKYMSMGIFGPRNSGKSHLMRQLVGQRGFAFGEIYVRGLDFKYDLESIHTYMGYS 1383
            |.|  :|..:.|...:|:.|...:|||..::.:.|:...:.|::.::|    ........::||.
  Rat  1298 IATRNISLCVRKGEVVGLLGHNGAGKSTSIKMITGEIKPSAGQVQLKG----NSTGDTPEFLGYC 1358

  Fly  1384 PQHRGLLNELTPREHIRLLCMIRGVPEAKIGEKMHDLCLMLNMTGWMHRKCSLLTAEKRHKLKIA 1448
            ||...|...:|.|||:.:...|:|:.::.....:..|...|.:...:......|:...:.||...
  Rat  1359 PQENALWQHMTVREHLEIFAAIKGMSKSDAAVAIARLADALKLQDQLKSPVKTLSEGVKRKLCFV 1423

  Fly  1449 LALVAYNKILVLDEPTCGMPATTRREIWNILR-YIRYCGKTIIFATNDELECKILADFIILFQDS 1512
            |:::....:::||||:.||....::::|..:: ......:..:..|:...|.:.:.|.:.:....
  Rat  1424 LSILGNPSVVLLDEPSTGMDPEGQQQMWQAIQATFANTERGALLTTHYMAEAEAVCDRVAIMVSG 1488

  Fly  1513 EMLAIGSLQYLRYKYSHGFYLEVRL 1537
            ::..|||:|:|:.|:...:.||:::
  Rat  1489 KLRCIGSIQHLKSKFGKEYLLEMKV 1513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1801NP_728408.3 ABC2_membrane_3 <246..379 CDD:289468 27/147 (18%)
ABC2_membrane_4 <293..448 CDD:289500 29/167 (17%)
EcfA2 499..717 CDD:224047 63/230 (27%)
P-loop_NTPase 500..721 CDD:304359 64/233 (27%)
ABC2_membrane_3 <972..1254 CDD:289468 59/316 (19%)
EcfA2 1307..1521 CDD:224047 43/216 (20%)
P-loop_NTPase 1324..1524 CDD:304359 41/200 (21%)
Abca8aNP_001268753.1 ABC2_membrane_3 27..416 CDD:289468 86/456 (19%)
DUF4149 267..354 CDD:290390 21/102 (21%)
ABC_subfamily_A 477..698 CDD:213230 64/233 (27%)
drrA 493..787 CDD:130256 84/325 (26%)
ABC2_membrane_3 <1005..1155 CDD:289468 33/171 (19%)
CcmA 1272..1591 CDD:224054 53/254 (21%)
ABC_subfamily_A 1279..1500 CDD:213230 47/232 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342183
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.850

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