DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1801 and abca1

DIOPT Version :9

Sequence 1:NP_728408.3 Gene:CG1801 / 33104 FlyBaseID:FBgn0031171 Length:1655 Species:Drosophila melanogaster
Sequence 2:XP_004910916.1 Gene:abca1 / 100491942 XenbaseID:XB-GENE-1001143 Length:2311 Species:Xenopus tropicalis


Alignment Length:2094 Identity:395/2094 - (18%)
Similarity:724/2094 - (34%) Gaps:677/2094 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 LNPIAHSKRLLYT--TTENENEQSIVSHKLQDINI---LTRMADSKREKTKYILAFTPE------ 92
            |.|:...| :|||  |...:...|.|:...|::::   |..|.:..|.:.|..:..:.|      
 Frog   379 LKPLLVGK-ILYTPSTPATQMLMSEVNKTFQELSVFRDLGAMWEEVRPQIKNFMESSQEMDLIRT 442

  Fly    93 -------TTF-------TSEVTKNVAKTLELSSTVGYESES-------EMQNQFD---------- 126
                   .||       |...|:|:::.| ...|...|:|:       |..|:.|          
 Frog   443 LLTNKGSKTFLDQQLNSTGWTTENISRFL-AKETADVETENGPFYSWREALNETDRVVLTLSRFM 506

  Fly   127 --------------------------ERTTLAGIVFNDLRDDGTPLTLSISIRFPSEFRTI-APF 164
                                      ||...|||||.|:.::.|.|...:..:...:...: ...
 Frog   507 ECVNLDKLEPVATEEMLIDKSMELLNERKFWAGIVFMDMPEEETELPHHVKYKIRMDIDNVERTN 571

  Fly   165 LTEDRLWITRCSGRINPGRDRAKHDKQQDI-YIREGFLQLQ---HQIFVEWYHQLRKDIVSTYPE 225
            ..:|..|        :||   .:.|..:|: ||..||..||   .|..:.         |.|..|
 Frog   572 KIKDGYW--------DPG---PRADPFEDMRYIWGGFSYLQDVVEQAIIR---------VQTGVE 616

  Fly   226 PNVEVYNILLKAADEPCSVMSV------AQLPTFLYNFIYLLPFLNIIRNVAAQ----------- 273
            ....:|   ::....||.|..:      ..:|.|: ...::.....||:.:..:           
 Frog   617 KRTGIY---VQQMPYPCYVDDIFLRVMSRSMPLFM-TLAWIYSVAVIIKGIVYEKEARLKETMRI 677

  Fly   274 --VEDGVMVHQWHYGYSFGMQWGIKFLVLFLRMCILGVIY--TIMLLAFWGFGGREGEFSGTGTI 334
              :::|::   |       :.|.|..|:..|....|.|:.  |..||.:           ...::
 Frog   678 MGLDNGIL---W-------LSWFISSLIPLLMSAALLVLILKTGNLLPY-----------SDPSV 721

  Fly   335 AFVCFITLYTVEIIITGMVVAKLFANPTNAVLFALMLWLFMYAAFCIILERYWDIHKYYVFFILV 399
            .|| |::::.|..|....:::.:|:....|.....:::..:|..:.:.:.  |..:..|...|..
 Frog   722 VFV-FLSVFAVVTISQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVA--WQDYVGYTLKIFA 783

  Fly   400 AFCN-CQMHFSMSLFR------------NCIEKP-----EMVNTIDFVLIFTSAISSALIYFLIL 446
            :|.: ....|...:|.            |.:|.|     ..:.|..|:::|     ..|:|.::.
 Frog   784 SFLSPVAFGFGCEVFALLEEQGVGVQWDNLLESPLEENGYNITTSGFMMLF-----DTLLYGIMT 843

  Fly   447 LAIQWRMPGTFLSRR----------------IVNNRPRKQQESDTTI------MYLGRAPSFQNF 489
            ..|:...||.:...|                ...|:|...|:..:.:      .:|....|.|| 
 Frog   844 WYIEAVFPGQYGIPRPWYFPFTKSYWCGEECKEYNQPHTVQKGSSEVCMEEEPSHLPLGVSIQN- 907

  Fly   490 EFGDVGSVELMRLRHVSTSHRDSERKILKNISMRIYRGEVFVILGHIGSGKLTLLRILAGLKFPL 554
                     |:::      :|:.::..:..:::..|.|::...|||.|:||.|.:.||.||..|.
 Frog   908 ---------LVKI------YRNGKKVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPT 957

  Fly   555 RGNVYIMGNPFEPNGEARRLVDFRFDEHGLNKH-------------LTVEQTIDYHVRLKLSPSE 606
            .|..|||..            |.|.:.:.:.::             ||||:.|.::.|||....|
 Frog   958 TGTAYIMKK------------DIRTELNSIRQNLGVCPQHNVLFDALTVEEHIWFYARLKGLSEE 1010

  Fly   607 SDRYEIERRKWLAILDQHVESRGV------RIGKLSSGSMKLVALCCCLAGDTPIIILEEPTTQL 665
            ..:.|:|         |.|...|:      :..:||.|..:.:::.....|.:.::||:|||..:
 Frog  1011 KVKAEME---------QMVNDVGLPHKKKYKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGV 1066

  Fly   666 TGREAQIFWSIVHAEKENRAFIIATYNVGEAEHVADRIGILSMGVLEASGTPFFLRSKFSSSVDL 730
            .....:..|.::...::.|..|::|:::.||:.:.|||.|:|.|.|...|:..||:::..:...|
 Frog  1067 DPYSRRGIWELLIKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYL 1131

  Fly   731 VIIKK------------------------------------------------------------ 735
            .::|:                                                            
 Frog  1132 TLVKRDNDSSLSSCRNSSSTMSYLKKESSKQTACKQHPSPMIAAPSASGTTAAVITKHSKHTAGQ 1196

  Fly   736 ----------------------PHVPD---------QPITDYINQFMQNIEPENEIGDSLTYRLP 769
                                  .|..|         ..|::.||:.:.......:||..|||.||
 Frog  1197 KKEAKDREDSVSQSSSDAGLGSDHESDTMTIGLTDVSAISNLINKHVPEARLVEDIGHELTYVLP 1261

  Fly   770 VIYRPRLQKLLIHL--EIDRKM--LGIENVRVVGAELSDIYMTLVTSFRLQQQ------------ 818
              |....:...:.|  |||.::  |||.:..:....|.:|::.:.....:..:            
 Frog  1262 --YEAAKEGAFVELFHEIDDRLSDLGISSYGIADTTLEEIFLKVADDTGVDAETSDGTLPARRKR 1324

  Fly   819 -------------------------MIPDVTQT---------FKYQVVSQKQLTKQRMRAMFYKK 849
                                     |.|:..:|         ..||:.|. .|.:|:..|:.:|:
 Frog  1325 YAFGDHQSCLRPFTEDDAFDTNDSDMDPESRETDYLSGIDGKGSYQLKSW-NLMRQQFTALLWKR 1388

  Fly   850 MIHT--------APNVWPIIMIFTSFVLIAII--------------------------------- 873
            :::.        |..|.|.:     |||||::                                 
 Frog  1389 LLYAKRSRKGFFAQIVLPAV-----FVLIALVFSLIVPPFGKYPSLELEPWMYDEQYTFFSNDAP 1448

  Fly   874 ------ARLSVLLDMP------------------------------------------------- 883
                  |.|..|:|.|                                                 
 Frog  1449 DDQGTQALLKALIDKPGFGTACMEGHSVMKVSCSGEEEEWSTQFVSQSVMDLFLNGNWTMENPSP 1513

  Fly   884 --------------------------KERQNSIHIGFREPEDVVKYLPNLKDCGYI--------- 913
                                      :.|||:        .|:::.|.......|:         
 Frog  1514 SCECSSDKRKKMLPICPPGAGGLPPFQRRQNT--------SDILQNLTGRNISDYLVKTYSQIIE 1570

  Fly   914 -DIRSAVKVNKKK----SVGVSRT---FDDDSFVCEKGSYRNNLRKKNE----------LRSFGA 960
             .:::.:.||:.:    |:|.|.:   ..::..|..    .|:::|:.|          |.||||
 Frog  1571 KSLKNKIWVNEFRYGGFSLGASNSPALPPNEEVVAS----INHIKKRLELPQNGAANRFLDSFGA 1631

  Fly   961 VES--DGDEHLNGYISQDMFHSAPMMLNLLQNVILRLSYPMQTDLV---VLVENHPL---PTQLS 1017
            ...  |..:::..:.:...:|:....||::.|.|||.......|..   :...||||   ..|||
 Frog  1632 FMKGLDTKDNVKVWFNNKGWHAVGAFLNVMNNAILRSKLREGEDPASYGITAFNHPLNLTKEQLS 1696

  Fly  1018 Q------KINVLDNKIAHIHVPLVVGCIIPLTVSVFVIPLVEEEIYDVRFLQHMAGLGLKVFWGI 1076
            :      .::||        |.:.|...:....:.||:.|::|.:...:.:|.::|:...::|..
 Frog  1697 EVALMTTSVDVL--------VSICVIFAMSFVPASFVVFLIQERVSKAKHMQCISGVKPVIYWLA 1753

  Fly  1077 NLFWDWFTFFVYSVIIVVIMSLMGIGGFGFYEN-AIMVVLLTTFGLAALPLTYLVS-MFVNKSIV 1139
            |..||...:.|.:.::::|........:....| .::.:||..:|.:..||.|..| :|...|..
 Frog  1754 NFVWDMCNYVVPATLVIIIFICFQQDSYVSSSNLPVLALLLLLYGWSITPLMYPASFIFKIPSTA 1818

  Fly  1140 RAFLVSV-LLQGVSGLVLYIIYW-----------DVANSNTIFFYAACMSPGFSLLDGVSNVYAQ 1192
            ...|.|| |..|::|.|...:..           ::..|..:.|...|:..|  |:|.|.|    
 Frog  1819 YVVLTSVNLFIGINGSVATFVLELFTNNKLSNINEILKSVLLIFPHFCLGRG--LIDMVKN---- 1877

  Fly  1193 NLEQAICIDKCEATDSCTEENMNEVVPNCKFD----TFFKWAAPGILPPILYMVLSALIFLMLIF 1253
               ||:       .|:......|..|....:|    ..|..|..|:      :..:..:.:...|
 Frog  1878 ---QAM-------ADALERFGENRFVSPMSWDLVGRNLFAMAVEGV------VFFAITLMIQYRF 1926

  Fly  1254 WIELHRREKKFHTSRDLRKMRTATYPFDDGDVADVKQKIAEADNT-----KAKQSVFLVDQVEAR 1313
            :|:......|.....|           :|.|||..:|:|.|....     |....::.:    .|
 Frog  1927 FIKPRPVNAKLPPVVD-----------EDEDVARERQRINEGGRNDILELKGLTKIYRM----KR 1976

  Fly  1314 VPAAGKRIHTVSFALNKYMSMGIFGPRNSGKSHLMRQLVGQRGFAFGEIYVRGLDFKYDLESIHT 1378
            .||    :..:...:......|:.|...:||:...:.|.|......||.:::......::..:|.
 Frog  1977 KPA----VDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTDVTAGEAFLKNHSILRNIHEVHQ 2037

  Fly  1379 YMGYSPQHRGLLNELTPREHIRLLCMIRGVPEAKIGEKMHDLCLMLNMTGWMHRKCSLLTAEKRH 1443
            .|||.||...:...||.|||:.|..::|||||.::       |   .:..|..||..|:...::|
 Frog  2038 NMGYCPQFDAINELLTGREHLELYALLRGVPEKEV-------C---KVAEWAIRKLGLVKYSEKH 2092

  Fly  1444 ----------KLKIALALVAYNKILVLDEPTCGMPATTRREIWNILRYIRYCGKTIIFATNDELE 1498
                      ||..|:||:....::.|||||.||....||.:||....:...|::::..::...|
 Frog  2093 AGNYSGGNKRKLSTAIALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVIKEGRSVVLTSHSMEE 2157

  Fly  1499 CKILADFIILFQDSEMLAIGSLQYLRYKYSHGFYLEVRLIRDGATLAESEENLRKDVENLAKFVN 1563
            |:.|...:.:..:.....:||:|:|:.::..|:.:.||       :|.|..:| |.||   :|.:
 Frog  2158 CEALCTRMAIMVNGRFKCLGSVQHLKNRFGDGYTIIVR-------IAGSNPDL-KPVE---EFFS 2211

  Fly  1564 FLHNRSELVGRLNNWFKFYVPVGHIVYSFLYGAMEKNKLRLNVSDYCIYQADMMSVVA-----QV 1623
            .....|.|..:..:..::.:.......:.::..:.|||.||::.||.:.|..:..|..     |.
 Frog  2212 HAFPGSVLKEKHRSMLQYQLRSSQSSLARIFSILSKNKKRLHIEDYSVSQTTLDQVFVNFAKDQS 2276

  Fly  1624 QETRAQLKHHLVQT 1637
            .:.:..|..|..||
 Frog  2277 DDDQKDLSLHKNQT 2290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1801NP_728408.3 ABC2_membrane_3 <246..379 CDD:289468 23/153 (15%)
ABC2_membrane_4 <293..448 CDD:289500 31/174 (18%)
EcfA2 499..717 CDD:224047 59/236 (25%)
P-loop_NTPase 500..721 CDD:304359 59/239 (25%)
ABC2_membrane_3 <972..1254 CDD:289468 65/311 (21%)
EcfA2 1307..1521 CDD:224047 56/223 (25%)
P-loop_NTPase 1324..1524 CDD:304359 54/209 (26%)
abca1XP_004910916.1 rim_protein 1..2272 CDD:130324 390/2074 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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