DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1801 and abca1b

DIOPT Version :9

Sequence 1:NP_728408.3 Gene:CG1801 / 33104 FlyBaseID:FBgn0031171 Length:1655 Species:Drosophila melanogaster
Sequence 2:XP_005173137.1 Gene:abca1b / 100136868 ZFINID:ZDB-GENE-030131-9826 Length:2282 Species:Danio rerio


Alignment Length:2012 Identity:380/2012 - (18%)
Similarity:721/2012 - (35%) Gaps:596/2012 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 ENENEQSIVSHKLQD---------------------INILTRMADSKREKTKYILAFTPETTF-- 95
            ||.||..::...|.:                     |:.|::.::..|.:.   .|||....|  
Zfish   432 ENSNEMDLMRTLLLNNLTANFFSAQLAGTQWSVEDVISFLSKHSEDTRPQG---TAFTWRDVFNE 493

  Fly    96 TSEVTKNVAKTLE---LSSTVGYESESEMQNQ----FDERTTLAGIVFNDLRDDGTPLTLSISIR 153
            |.:...::::.:|   |.......:|.::.|:    .|.|...|||||.|:..:.:.|..:::.:
Zfish   494 TDQAIMSISRFMECVNLDKLEPVSTEEKLVNESMSLLDNRKFWAGIVFLDIPSNSSELPPNVNYK 558

  Fly   154 FPSEFRTI-APFLTEDRLWITRCSGRINPGRDRAKHDKQQDI-YIREGFLQLQHQIFVEWYHQLR 216
            ...:...: .....:|..|        :||   .:.|..:|: ||..||..||..:    .|.:.
Zfish   559 IRMDIDNVERTNKIKDGYW--------DPG---PRADPFEDLRYIWGGFSYLQDVV----EHSII 608

  Fly   217 KDIVSTYPEPNVEVYNILLKAADEPCSVMSV------AQLPTFLYNFIYLLPFLNIIRNVAAQ-- 273
            :.:..     :.|...:.::....||.|..:      ..:|.|: ...::.....||:.|..:  
Zfish   609 RAVTG-----SKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFM-TLAWMYSVAIIIKGVVYEKE 667

  Fly   274 -----------VEDGVMVHQWHYGYSFGMQWGIKFLVLFLRMCILGVIYTIMLLAFWGFGGREGE 327
                       :::|::...|.......:......|||.|:|                  |....
Zfish   668 ARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVLLLKM------------------GNLLP 714

  Fly   328 FSGTGTIAFVCFITLYTVEIIITGMVVAKLFANPTNAVLFALMLWLFMYAAF--CIILERYWDIH 390
            :|..|.:  ..|:..:.|..|:...:::..||....|.....:::..:|..:  |:..:.|....
Zfish   715 YSDPGVV--FLFLGSFAVVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFA 777

  Fly   391 KYYVFFIL--VAF-CNCQMHFSM-----------SLFRNCIEKPEMVNTIDFVLIFTSAISSALI 441
            ...:..:|  ||| ..|: :|::           :||.:.:|:.:...|...:|::    ..|.:
Zfish   778 AKVIASLLSPVAFGFGCE-YFALFEEQGVGIQWNNLFSSPVEEDDYNLTTCLILMY----FDAFL 837

  Fly   442 YFLILLAIQWRMPGTF---------------LSRRIVNNRPRKQQESDTTIMYLGRAPSFQNFEF 491
            |.::...|:...||.:               ......||.....::|:...:.:...|:  :.:.
Zfish   838 YGVMTWYIETVFPGQYGIPRPWYFPFTKSYWFGENSTNNTAIHGKKSNAGAVCIEEEPT--HLKL 900

  Fly   492 GDVGSVELMRLRHVSTSHRDSERKILKNISMRIYRGEVFVILGHIGSGKLTLLRILAGLKFPLRG 556
            |       :.:.::...:|..::..:..:::..:.|::...|||.|:||.|.:.||.||..|..|
Zfish   901 G-------VYIENLVKVYRHGKKLAVDGLTLGFHEGQITSFLGHNGAGKTTTMSILTGLFPPTSG 958

  Fly   557 NVYIMGNPFEPN-GEARRLVDFRFDEHGLNKHLTVEQTIDYHVRLKLSPSESDRYEIERRKWLAI 620
            ..||||...... ...|:.:......:.|...||||:.|.::.|||....|..:.|:|:     |
Zfish   959 TAYIMGKDIRSELSSIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEEVKAEMEQ-----I 1018

  Fly   621 LDQ----HVESRGVRIGKLSSGSMKLVALCCCLAGDTPIIILEEPTTQLTGREAQIFWSIVHAEK 681
            |..    |  .|..|..:||.|..:.:::.....|.:.::||:|||..:.....:..|.::...:
Zfish  1019 LSDTGLPH--KRKSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYR 1081

  Fly   682 ENRAFIIATYNVGEAEHVADRIGILSMGVLEASGTPFFLRSKFSSSVDLVIIKK----------- 735
            ..|..:::|:::.||:.:.|||.|:|.|.|...|:..||:::..:...|.::||           
Zfish  1082 AGRTILLSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKNTEPSLSSCRN 1146

  Fly   736 ---------------------------------------PHVPDQPI-TDYINQFMQNIEPE--- 757
                                                   |..|..|: ...|::.:....|.   
Zfish  1147 SSSTVSFVKKDDNASESSSDAGLGSDQESEAATAIGTSWPESPVVPVDVTIISRLILKHVPAARM 1211

  Fly   758 -NEIGDSLTYRLPVIYRPRLQKLLIHL--EIDRKM--LGIENVRVVGAELSDIYMTLVTSFRLQQ 817
             .:.|..:||.||  |........:.|  ::|.::  |||.:..|....|.:|::.:.....:..
Zfish  1212 VEDQGHEITYVLP--YESAKNGAFVELFHDLDDRLADLGISSYGVSDTTLEEIFLKVAEDSGVDT 1274

  Fly   818 QMIPDVTQTFK-------------------------------------------------YQVVS 833
            :|:.|.|...:                                                 |||..
Zfish  1275 EMLSDGTLPVRRQRRHAFGADHQSCLKPLTEDDSFDCNESEGDPESKETDYLSGSDGKGSYQVKG 1339

  Fly   834 QKQLTKQRMRAMFYKKMIHT--------APNVWPIIMIFTSFVLIAIIARLSV------------ 878
            . .|.:|:..|:.:|::::.        |..|.|.:     ||.||::..|.|            
Zfish  1340 W-SLKRQQFVALLWKRLLYARRSRKGFFAQIVLPAV-----FVCIALVFSLIVPPFGKYPSLALN 1398

  Fly   879 ---------------------------LLDMPK-----ERQNSI-----HIGFRE------PEDV 900
                                       |.|.|.     .:..||     .:|..|      ||.:
Zfish  1399 PWMYEEQFMFFSEDAPYDVSTHKLLRALFDDPGFGTRCMKGESIPDAPCTMGDEEWSTPEVPESI 1463

  Fly   901 V-------------------------KYLP----------------------------NLKDCGY 912
            :                         |.||                            |:.|  |
Zfish  1464 IEILTTRNWTMNDPSPACECSCNGKKKMLPECPAGAGGLPPPQIKISETETLQNLTGRNISD--Y 1526

  Fly   913 I----------DIRSAVKVNKKK----SVGVSRT--------FDD-------------------D 936
            :          .:::.:.||:.:    |:|...|        .||                   |
Zfish  1527 LVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARSTQVLPPAEEIDDAISRVREIFQLGKDSGSAAD 1591

  Fly   937 SFVCEKGSYRNNLRKKNELRSFGAVESDGDEHLNGYISQDMFHSAPMMLNLLQNVILRLSYPMQT 1001
            .|:....::.|.|..||.::.              :.:...:||....||::.|.|||.:.|...
Zfish  1592 RFLKSLSAFINGLDTKNNVKI--------------WFNNKGWHSIGAFLNVMNNGILRANLPPGK 1642

  Fly  1002 D---LVVLVENHPL---PTQLSQ------KINVLDNKIAHIHVPLVVGCIIPLTVSVFVIPLVEE 1054
            |   ..:...||||   ..||||      .::||        |.:.|...:....:.||:.|::|
Zfish  1643 DPSEFGITAYNHPLNLTKEQLSQVALMTTSVDVL--------VSICVIFAMSFVPASFVVFLIQE 1699

  Fly  1055 EIYDVRFLQHMAGLGLKVFWGINLFWDWFTFFVYSVIIVVIMSLMGIGGFGFYENA--------I 1111
            .:...:.:|.::|:...::|..|..||...:.|.:.::::|...       |.:.|        :
Zfish  1700 RVNKAKHMQFISGVQPYLYWLANFLWDMCNYVVPATLVILIFVC-------FQQKAYVSATNLPV 1757

  Fly  1112 MVVLLTTFGLAALPLTYLVS-MFVNKSIVRAFLVSV-LLQGVSGLVLYIIYW-----------DV 1163
            :.:||..:|.:..||.|..| :|...|.....|.|| :|.|::|.:...:..           |:
Zfish  1758 LALLLLLYGWSITPLMYPASFLFKIPSTAYVVLTSVNILIGINGSISTFVMELFGNHEIGGINDI 1822

  Fly  1164 ANSNTIFFYAACMSPGFSLLDGVSNVYAQNLEQAICIDKCEATDSCTEENMNEVVPNCKFDTFFK 1228
            ..:..:.|...|:..|  |:|.|.|   |.:..|:             |...|    .:|.:..:
Zfish  1823 LKNVLLIFPHFCLGRG--LIDMVKN---QAMADAL-------------ERFGE----NRFRSPLE 1865

  Fly  1229 WAAPGILPPILYMVLSALIFLMLIFWIELHRREKKFHTSRDLRKMRTATYPFDDGDVADVKQKI- 1292
            |...|  ..:..|.:..::|.::...|:.    :.|...:.|.. :.:....:|.|||..:|:| 
Zfish  1866 WDMVG--KNLFAMAVEGVVFFIITVLIQY----RFFFEPKSLCP-KLSPIGEEDEDVARERQRIM 1923

  Fly  1293 ---AEADNTKAKQ--SVF------LVDQVEARVPAAGKRIHTVSFALNKYMSMGIFGPRNSGKSH 1346
               .:.|..:.:|  .|:      .||::...:|..              ...|:.|...:||:.
Zfish  1924 SGAGQGDILELRQLTKVYKRKQKPAVDRLCVGIPPG--------------ECFGLLGVNGAGKTS 1974

  Fly  1347 LMRQLVGQRGFAFGEIYVRGLDFKYDLESIHTYMGYSPQHRGLLNELTPREHIRLLCMIRGVPEA 1411
            ..:.|.|......||.::.|.....:::.:|..|||.||...:.:.||.|||:....::||||| 
Zfish  1975 TFKMLTGDSVVTKGEAFIAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPE- 2038

  Fly  1412 KIGEKMHDLCLMLNMTGWMHRKCSLL----------TAEKRHKLKIALALVAYNKILVLDEPTCG 1466
                  :::|.:..   |..||..|:          :.....||..|::|:....::.|||||.|
Zfish  2039 ------NEVCAVAE---WGIRKLGLVKYVDKNAGSYSGGNMRKLSTAISLIGAPPVVFLDEPTTG 2094

  Fly  1467 MPATTRREIWNILRYIRYCGKTIIFATNDELECKILADFIILFQDSEMLAIGSLQYLRYKYSHGF 1531
            |....||.:||.:..:...|::::..::...||:.|...:.:..:.....:||:|:|:.::..|:
Zfish  2095 MDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGY 2159

  Fly  1532 YLEVRLIRDGATLAESEENLRKDVENLAKFVNFLHNRSELVG-----RLNNWFKFYVPVGHIVYS 1591
            .:.:|:....           .|::.:.||:     .|||.|     :..|..::.:|......:
Zfish  2160 TIILRVAGPD-----------PDLQPVMKFI-----ESELPGSTLKEKHRNMLQYQLPSSLTSLA 2208

  Fly  1592 FLYGAMEKNKLRLNVSDYCIYQADMMSVVAQVQETRAQLKHHLVQTEGPLPLDTTSPKKGRA 1653
            .::..:.|||..|.:.||.:.|..:..|.  |...:.|...|         .|::..:||.|
Zfish  2209 HIFSILAKNKEFLRIEDYSVSQTTLDQVF--VNFAKDQSDDH---------SDSSISRKGTA 2259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1801NP_728408.3 ABC2_membrane_3 <246..379 CDD:289468 22/151 (15%)
ABC2_membrane_4 <293..448 CDD:289500 30/170 (18%)
EcfA2 499..717 CDD:224047 59/222 (27%)
P-loop_NTPase 500..721 CDD:304359 60/225 (27%)
ABC2_membrane_3 <972..1254 CDD:289468 68/314 (22%)
EcfA2 1307..1521 CDD:224047 54/223 (24%)
P-loop_NTPase 1324..1524 CDD:304359 52/209 (25%)
abca1bXP_005173137.1 rim_protein 1..2242 CDD:130324 374/1984 (19%)
ABC_subfamily_A 902..1121 CDD:213230 60/225 (27%)
ABC_subfamily_A 1932..2152 CDD:213230 57/243 (23%)
DUF4162 2146..2238 CDD:290451 23/109 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.