DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA and PDR18

DIOPT Version :9

Sequence 1:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_014468.3 Gene:PDR18 / 855807 SGDID:S000005353 Length:1333 Species:Saccharomyces cerevisiae


Alignment Length:1296 Identity:249/1296 - (19%)
Similarity:423/1296 - (32%) Gaps:445/1296 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   519 VEQRDPKAFETEPEGKHIGLQ------MRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKT 577
            ||..|....|.:..|..:.|.      :|..|.|...|:::|.:|:.....|:.::||..|||.|
Yeast     6 VEGLDSSFLEGQTFGDILCLPWTIIKGIRERKNRNKMKIILKNVSLLAKSGEMVLVLGRPGAGCT 70

  Fly   578 TTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICP------QHNVLFDEMSVSNHIRF--F 634
            :.:....|.....:| .:..|......|....|.....|      :.:|.|..::|...:.|  .
Yeast    71 SFLKSAAGETSQFAG-GVTTGHISYDGIPQKEMMQHYKPDVIYNGEQDVHFPHLTVKQTLDFAIS 134

  Fly   635 SRMKGLRGKAVEQE---------VAKYLKMIELEDK--ANVASSKLSGGMKRKLSVCCALCGDTK 688
            .:|...|...|.:|         .||...:....|.  .|...|.:|||.::::|:..||.....
Yeast   135 CKMPAKRVNNVTKEEYITANREFYAKIFGLTHTFDTKVGNDFISGVSGGERKRVSIAEALAAKGS 199

  Fly   689 VVLCDEPSSGMDPS-------ARRQLWDLLQQEKVGRTLLLTTHFMDEADVLG--DRIAIMCDG- 743
            :...|..:.|:|.|       |.|.:.:||     |.|.|:|.:...| ::..  |::.::..| 
Yeast   200 IYCWDNATRGLDSSTALEFARAIRTMTNLL-----GTTALVTVYQASE-NIYETFDKVTVLYAGR 258

  Fly   744 ELKCQGTSFFLKKQYGSGYRLICVKRDDCETNE-VTAL-----LNKYIPGLKPECDIGAELSYQL 802
            ::.|..|:  ..|.|......:|..|.  .|.| :||:     |::..||.:          ||:
Yeast   259 QIFCGKTT--EAKDYFENMGYLCPPRQ--STAEYLTAITDPNGLHEIKPGFE----------YQV 309

  Fly   803 PDSASAKFEEMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGAEKDNTGNI-KDQHEIMNGGSGF 866
            |.:|. :||:.:                  :.|.|...:|        |.| |.:||:   .:.:
Yeast   310 PHTAD-EFEKYW------------------LDSPEYARLK--------GEIQKYKHEV---NTEW 344

  Fly   867 RGEDDNESVQSDGIFSENRRLLQGLQLLSNQWKAMLLKKFLYT---WRNKLLLLIQNIMPV---- 924
            ..:..|||:..:.  |:..|                 ||..||   |....|..|:..:.:    
Yeast   345 TKKTYNESMAQEK--SKGTR-----------------KKSYYTVSYWEQIRLCTIRGFLRIYGDK 390

  Fly   925 -FFVVVTILII---------------KTQGTFQELKPITISLTQYPLA----VTVLDRSNVQNGT 969
             :.|:.|...|               .|.|.|.....:..||..|.|.    ::...|..:|...
Yeast   391 SYTVINTCAAIAQAFITGSLFYQAPSSTLGAFSRSGVLFFSLLYYSLMGLANISFEHRPILQKHK 455

  Fly   970 GYEIANKYEDLARSYGSNYGLELTGTQGFEDYILDLGKTIQVRINSRYLVAATITESKITAWLNN 1034
            .|.:.:...:...|..|::...:.|...|   |:.|           |.:|.....:        
Yeast   456 VYSLYHPSAEALASTISSFPFRMIGLTFF---IIIL-----------YFLAGLHRSA-------- 498

  Fly  1035 QALHTAPLTVNMVHNAIADKLFGSSVKIQVTNAPLPYTTSTLLSQLSTGNNLGTQLASNLCFCMC 1099
            .|..|..|.:.|...||. .||              ...|:|...||..|::...:..::     
Yeast   499 GAFFTMYLLLTMCSEAIT-SLF--------------QMVSSLCDTLSQANSIAGVVMLSI----- 543

  Fly  1100 FVSSIYILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLST 1164
               ::|..::|:           :..:..|..|:|                              
Yeast   544 ---AMYSTYMIQ-----------LPSMHPWFKWIS------------------------------ 564

  Fly  1165 FGELGRYYLLLLLFGFAVLPFIYIMSLFFREPATGFARVSIVNI-FCGMALFIVVVVMSSELFDT 1228
                   |:|.:.:.|.                      |::|. |.|..:              
Yeast   565 -------YILPIRYAFE----------------------SMLNAEFHGRHM-------------- 586

  Fly  1229 KDTADILGWIFRIFPHFSLAMSLNKVYTNTATRNACAKAGALP--------PILLCELVPQCCNL 1285
                |..|.:....|.|...:..|:|         ||..|:.|        ..|..:...:..| 
Yeast   587 ----DCGGTLVPSGPGFENILPENQV---------CAFVGSRPGQSWVLGDDYLRAQYQYEYKN- 637

  Fly  1286 KPYFAWEEPGVLPETVYMAVTGVVFFLIIIVLEFRLINELMFKIRQLISKPPPPPTEG------- 1343
                .|...|::          ..|.:..|||            |.:.::...|...|       
Yeast   638 ----TWRNFGIM----------WCFLIGYIVL------------RAVFTEYKSPVKSGGDALVVK 676

  Fly  1344 -----------QLDDDVANERERILQMSSNELATKN--------------------LVLDRVTKY 1377
                       ...:|..|....|......|:|:.|                    .|...:...
Yeast   677 KGTKNAIQRSWSSKNDEENLNASIATQDMKEIASSNDDSTSADFEGLESTGVFIWKNVSFTIPHS 741

  Fly  1378 YGQFMAVNQVS-LCVQEVECFGLLGVNGAGKTTTFKMM--------TGDERISSGAAYVQGLSLE 1433
            .||...::.|| .||... ...|:|.:||||||....:        |||       ..|.||.::
Yeast   742 SGQRKLLDSVSGYCVPGT-LTALIGESGAGKTTLLNTLAQRNVGTITGD-------MLVDGLPMD 798

  Fly  1434 SNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQE----------------SRIRQLSED 1482
            :   |..:..||..|.|..:.:||.:|.|:....:|..|.                ..:::.||.
Yeast   799 A---SFKRRTGYVQQQDLHVAELTVKESLQFSARMRRPQSIPDAEKMEYVEKIISILEMQEFSEA 860

  Fly  1483 LAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPS-VIYLDEPTTGMDPAARRQLWNMVCRIR 1546
            |....|:..::::         ::|||..:.::|.|. :::|||||:|:|..:...:..|:.|:.
Yeast   861 LVGEIGYGLNVEQ---------RKKLSIGVELVGKPDLLLFLDEPTSGLDSQSAWAVVKMLKRLA 916

  Fly  1547 DSGKSIVLTSHS-----MEECEALCTRLAIMVNGEFKCIGSTQHL----KNK------FSKGLIL 1596
            .:|:||:.|.|.     .|:.:    ||.::..|     |.|.:.    ||.      |.|....
Yeast   917 LAGQSILCTIHQPSATLFEQFD----RLLLLGKG-----GQTIYFGEIGKNSSSVIKYFEKNGAR 972

  Fly  1597 KIKVRRN-----LEALRQARLSGGYARNPDEQTVP---------AQMSQRDIDAVKEFVET 1643
            |.:...|     |||:      |..|....:|..|         |.::::..|.:|:...|
Yeast   973 KCQQNENPAEYILEAI------GAGATASVQQNWPDIWQKSHEYANINEKINDMIKDLSST 1027

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500
ABC2_membrane_3 <269..475 CDD:289468
CcmA 538..843 CDD:224054 75/345 (22%)
ABC_subfamily_A 538..755 CDD:213230 56/251 (22%)
ABC2_membrane_3 913..1316 CDD:289468 63/435 (14%)
ABC_subfamily_A 1369..1587 CDD:213230 61/252 (24%)
drrA 1376..1702 CDD:130256 77/323 (24%)
PDR18NP_014468.3 3a01205 1..1333 CDD:273362 249/1296 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 105 1.000 Inparanoid score I1418
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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