DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA and SNQ2

DIOPT Version :9

Sequence 1:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_010294.1 Gene:SNQ2 / 851574 SGDID:S000002418 Length:1501 Species:Saccharomyces cerevisiae


Alignment Length:1026 Identity:185/1026 - (18%)
Similarity:332/1026 - (32%) Gaps:371/1026 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 THANFTALVFFL---------IIYIVSSICFCFMMATFFSRASTAAAVTGLI------------- 390
            |..:|..:..||         :..:|||:|         ...|.|.:::|::             
Yeast   626 TAGSFFTIYLFLTMCSEAINGLFEMVSSVC---------DTLSQANSISGILMMSISMYSTYMIQ 681

  Fly   391 ------WF--IAYI-PYSFTINS-----------------------YDDLS--------LSSKLG 415
                  ||  |:|: |..:...|                       ||:||        :.||.|
Yeast   682 LPSMHPWFKWISYVLPIRYAFESMLNAEFHGRHMDCANTLVPSGGDYDNLSDDYKVCAFVGSKPG 746

  Fly   416 WSLISNTAMGFGIKLILGFEGTGEGLQ------WSNFFTPVSVDDTLTLGAVMIMMLVSCVIYMI 474
            .|            .:||.:......|      |.||            |.:...:|...|:.:|
Yeast   747 QS------------YVLGDDYLKNQFQYVYKHTWRNF------------GILWCFLLGYVVLKVI 787

  Fly   475 ICLYVEQVMPGSFGVPRPWNFPFTREFWCGEREYTGVEDIPNGHVEQRDP---------KAFETE 530
            ...|...|..|...:          .|..|.:.:.       .|.::..|         :.|.:|
Yeast   788 FTEYKRPVKGGGDAL----------IFKKGSKRFI-------AHADEESPDNVNDIDAKEQFSSE 835

  Fly   531 PEG-----------------KHIGLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTT 578
            ..|                 |.:...:.:   ..|.:|::..:|.......:|.|:|.:||||||
Yeast   836 SSGANDEVFDDLEAKGVFIWKDVCFTIPY---EGGKRMLLDNVSGYCIPGTMTALMGESGAGKTT 897

  Fly   579 TISML----TGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMK- 638
            .::.|    .|:.   :|..::||..|..:.|   ...|...|.::...|::|...::|.:||: 
Yeast   898 LLNTLAQRNVGII---TGDMLVNGRPIDASFE---RRTGYVQQQDIHIAELTVRESLQFSARMRR 956

  Fly   639 --GLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGM----KRKLSVCCALCGDTKVVL-CDEPS 696
              .|........|.|.::::.:|:.|.....::..|:    ::|||:...|.....::| .|||:
Yeast   957 PQHLPDSEKMDYVEKIIRVLGMEEYAEALVGEVGCGLNVEQRKKLSIGVELVAKPDLLLFLDEPT 1021

  Fly   697 SGMDPSARRQLWDLLQQ-EKVGRTLLLTTH-----FMDEADVLGDRIAIMCDGELKCQGTSFFLK 755
            ||:|..:...:..||:: .|.|:::|.|.|     ..:|.    ||:.::..|     |.:.:  
Yeast  1022 SGLDSQSSWAIIQLLRKLSKAGQSILCTIHQPSATLFEEF----DRLLLLRKG-----GQTVY-- 1075

  Fly   756 KQYGSGYRLICVKRDDCETNEVTALLNKYIPGLKPECDIGAELSYQLPDSASAKFEEMFGQLEEQ 820
              :|           |...|..| :||.:......:||                       ..|.
Yeast  1076 --FG-----------DIGKNSAT-ILNYFERNGARKCD-----------------------SSEN 1103

  Fly   821 SDELHLNGYGVGITSMEEVFMKVGAEKDNTGNIKDQHEIMNGGSGFRGEDDNESVQSDGIFSENR 885
            ..|..|...|.|.|:                ::|              ||.:|...:...|.:.:
Yeast  1104 PAEYILEAIGAGATA----------------SVK--------------EDWHEKWLNSVEFEQTK 1138

  Fly   886 RLLQGL--QLLSNQWKAMLLKK-------FLYTWRNKLLLLIQNIMPVFFVVVTILIIKTQGTFQ 941
            ..:|.|  .|...:.|:.:..|       :.|.:|                   .::|:|..:|.
Yeast  1139 EKVQDLINDLSKQETKSEVGDKPSKYATSYAYQFR-------------------YVLIRTSTSFW 1184

  Fly   942 ELKPITISLTQYPLAVTVLDRSNVQNGTGYEIANKYEDLARSYGSNYGLELTGTQGFEDYILDLG 1006
            .      ||..      ::.:..:....|..|...:.::.:||   .||:......|...||...
Yeast  1185 R------SLNY------IMSKMMLMLVGGLYIGFTFFNVGKSY---VGLQNAMFAAFISIILSAP 1234

  Fly  1007 KTIQVR---INSRYLVAATITESK--------ITAWLNNQALHTAPLTVNMVHNAIADKLFGSSV 1060
            ...|::   |.||.|.....::|.        ||.:|:....|....|:..|.:....::|    
Yeast  1235 AMNQIQGRAIASRELFEVRESQSNMFHWSLVLITQYLSELPYHLFFSTIFFVSSYFPLRIF---- 1295

  Fly  1061 KIQVTNAPLPYTTSTLLSQL-STGNNLGTQL--------ASNLCFCMCFVSSIYILFLIKERESR 1116
             .:.:.:.:.:....::.|| ..|  ||..:        ::|:...:|.                
Yeast  1296 -FEASRSAVYFLNYCIMFQLYYVG--LGLMILYMSPNLPSANVILGLCL---------------- 1341

  Fly  1117 AKLLQFVGGVK-------VWTF-WLSQFICDFASYIVTALIVVITIVC-------FQETGLSTFG 1166
            :.:|.|.|..:       .||| |.:.....|...:|..::....:||       |.....||.|
Yeast  1342 SFMLSFCGVTQPVSLMPGFWTFMWKASPYTYFVQNLVGIMLHKKPVVCKKKELNYFNPPNGSTCG 1406

  Fly  1167 ELGRYYLLLLLFGFAVLPFIYIMSLFFREPATGFARVSIVNIFCGMALFIV 1217
            |.             :.||:        |.|||:.........|...::.|
Yeast  1407 EY-------------MKPFL--------EKATGYIENPDATSDCAYCIYEV 1436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500 26/147 (18%)
ABC2_membrane_3 <269..475 CDD:289468 34/194 (18%)
CcmA 538..843 CDD:224054 69/322 (21%)
ABC_subfamily_A 538..755 CDD:213230 55/234 (24%)
ABC2_membrane_3 913..1316 CDD:289468 58/340 (17%)
ABC_subfamily_A 1369..1587 CDD:213230
drrA 1376..1702 CDD:130256
SNQ2NP_010294.1 3a01205 103..1480 CDD:273362 185/1026 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 105 1.000 Inparanoid score I1418
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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