DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA and ABCA7

DIOPT Version :9

Sequence 1:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster
Sequence 2:NP_190362.2 Gene:ABCA7 / 823932 AraportID:AT3G47780 Length:935 Species:Arabidopsis thaliana


Alignment Length:966 Identity:253/966 - (26%)
Similarity:419/966 - (43%) Gaps:192/966 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LLWKNWTLQWNHKWQMVIELVLPAIFSLLLVLVRTLVDTEQKGVRYYN------EQNLT-----D 66
            ||.||.|.|..:.|..:..:::|....:|||:::.|.||:........      |:|..     :
plant    16 LLRKNLTYQKRNLWSNIRLIMIPFYLCILLVIIQILFDTQVNNSADNRCGCECIERNRAGKCQRE 80

  Fly    67 LNLLQH---------SLHRSSYLGKLIALIAPNRR----------RKNGGFSKFEFILCYSPVNP 112
            |..|:|         |:.|......|:.:..|..|          |:.|   .....:.::..|.
plant    81 LCGLEHSKPDQAFFCSIPRPPLWPPLLQIPRPESRDVRGLRDDSCRRTG---SCPVTILFTGNNR 142

  Fly   113 VLKKLVEEAWQSLGKNKICESENATQLELDTVSKNAFA-------------GVQFDDAWANLTEN 164
            .|...|.|   :|..:.:  |.||::: |.|::.|...             |:..:.:..|:...
plant   143 SLGTTVSE---NLFTSSV--SANASEI-LRTLANNVLGTTVEADFTNYLDPGIASNLSIYNIQPR 201

  Fly   165 DPLPNDFHFA-----LRFPAELRTATIAIANTWLTMRLFPTIDLTGPRNEGDD------DGGIPP 218
            ..|...|.|:     |:|..|||  .:..:|.|           |....|.:|      ..|.|.
plant   202 CILNATFPFSFEQPPLKFEKELR--CVQGSNLW-----------TNTSKEVNDKIFKGYKKGNPE 253

  Fly   219 GYL-------------REGF-----------------------LPLQHSL-SMAYLR--QKSGEQ 244
            |.:             |..|                       :|...:| |.|||:  |..|.:
plant   254 GKINEIAAAYDLLNTDRNNFNVHIWYNSTYKDDAGNRLIKLIRVPRSVNLVSNAYLQFLQGPGTR 318

  Fly   245 DLPNVVMKRYPFP--------AYIFDPLLEGMSSIMSLIILLSFIYPCTYITKYITAEKEKQLKE 301
            .|...| |..|.|        |.:..||      ..:.:|||.|    ..|...:..||::.|:.
plant   319 MLFEYV-KEMPKPETSLRLDIASLIGPL------FFTWVILLLF----PVILSSLVYEKQQHLRI 372

  Fly   302 VMKIMGLSNWLHWT---AWFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIYI 363
            :||:.||.:..:|.   |:|      ||||.:.:..|:....:..:......:::....|..:|:
plant   373 IMKMHGLGDGPYWMISYAYF------LTISVLYVICLMIFGSAIGLKFFRLNSYSIQFVFYFLYL 431

  Fly   364 VSSICFCFMMATFFSRASTAAAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGI 428
            ...|...|::::.||:..|:...:.:..|.:.:...|.:|...:.| |...||.::.....||.:
plant   432 NLQIALAFLVSSVFSKVKTSTVASYIYVFGSGLLGLFLLNFLIEDS-SFPRGWIIVMELYPGFSL 495

  Fly   429 KLIL------GFEGT--GE-GLQWSNFFTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMP 484
            ...|      .|.|.  || |::|.: |...::||      |..:::|...:.:|...|::::  
plant   496 YRGLYELAQFAFRGNLRGEDGMKWKD-FGDSAMDD------VFYIIVVEWFLALIAAYYIDKI-- 551

  Fly   485 GSFGVPRPWNF---PF-----------TREFWCGEREYTGVEDIPNGHVEQRDPKAFETEPEGKH 535
             |.....|..|   ||           .|:   |.:....:|. |:...|.:..:....|....|
plant   552 -SSSGRNPLFFLQNPFKKSPSLRRPSLQRQ---GSKVSVDMEK-PDVTHESKKVERLMLESSTSH 611

  Fly   536 IGLQMRHLKK----RFGN--KMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTA 594
             .:...:|||    |.||  |:.|:|||:.:...|...:||.||||||:.|:|:||:..||||||
plant   612 -AIVCDNLKKVYPGRDGNPPKLAVRGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLLKPTSGTA 675

  Fly   595 IINGSDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIEL- 658
            ::.|.||..:::....|:|:||||::|::.::...|:.|:.|:|.|:|..:.|.|.:.||.:.| 
plant   676 LVQGLDICNDMDRVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGADLNQAVEESLKSVNLF 740

  Fly   659 -EDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLL 722
             ...|:..:.|.||||||:|||..:|.|:.|||..||||:|:||::|:.||.::::.|....::|
plant   741 HGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKRAKQNTAIIL 805

  Fly   723 TTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKYIPG 787
            |||.|:||:.|.||:.|..||.|:|.|....||.:||..|........:.|.| |..|:....|.
plant   806 TTHSMEEAEFLCDRLGIFVDGGLQCIGNPKELKGRYGGSYVFTMTTSSEHEQN-VEKLIKDVSPN 869

  Fly   788 LKPECDIGAELSYQLPDSASAKFEEMFGQLEEQSDELHLNGYGVGITSMEEVFMKV 843
            .|....|.....::|| ....:..|:|..:|:......:..:|:..|::|:||:||
plant   870 AKKIYHIAGTQKFELP-KEEVRISEVFQAVEKAKSNFTVFAWGLADTTLEDVFIKV 924

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500 42/196 (21%)
ABC2_membrane_3 <269..475 CDD:289468 48/217 (22%)
CcmA 538..843 CDD:224054 116/312 (37%)
ABC_subfamily_A 538..755 CDD:213230 94/224 (42%)
ABC2_membrane_3 913..1316 CDD:289468
ABC_subfamily_A 1369..1587 CDD:213230
drrA 1376..1702 CDD:130256
ABCA7NP_190362.2 ABC2_membrane_3 <324..>458 CDD:289468 34/150 (23%)
CcmA 612..926 CDD:224054 118/315 (37%)
ABC_subfamily_A 617..838 CDD:213230 94/220 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.710

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